March 2009 Archives by date

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Starting: Sun Mar 1 23:06:22 UTC 2009
Ending: Tue Mar 31 22:59:45 UTC 2009
Messages: 269

• [Bioperl-l] Remote Blast and Report   Smithies, Russell
• [Bioperl-l] Remote Blast and Report   Ocar Campos
• [Bioperl-l] Remote Blast and Report   Jason Stajich
• [Bioperl-l] Remote Blast and Report   Ocar Campos
• [Bioperl-l] Remote Blast and Report   Ocar Campos
• [Bioperl-l] Implementing Logistic Regression for data anaylsis   Abhishek Pratap
• [Bioperl-l] Offering to help   Bruno Vecchi
• [Bioperl-l] Bio::DB::GFF again   Alper Yilmaz
• [Bioperl-l] Offering to help   Heikki Lehvaslaiho
• [Bioperl-l] Offering to help   Chris Fields
• [Bioperl-l] Offering to help   Bryan Bishop
• [Bioperl-l] Offering to help   Caroline
• [Bioperl-l] Offering to help   Chris Fields
• [Bioperl-l] Re mote Blast and Report   gopu_36
• [Bioperl-l] Offering to help   Bryan Bishop
• [Bioperl-l] Re mote Blast and Report   Ocar Campos
• [Bioperl-l] Bio::DB::GFF again   Aaron Mackey
• [Bioperl-l] Offering to help   Chris Fields
• [Bioperl-l] Offering to help   Bryan Bishop
• [Bioperl-l] Offering to help   Bruno Vecchi
• [Bioperl-l] Offering to help   Chris Fields
• [Bioperl-l] Offering to help   Chris Fields
• [Bioperl-l] Offering to help   Adam Witney
• [Bioperl-l] Offering to help   Bryan Bishop
• [Bioperl-l] problem of bioperl on mac   MADSGENE
• [Bioperl-l] problem of bioperl on mac   Kevin Brown
• [Bioperl-l] problem of bioperl on mac   Koen van der Drift
• [Bioperl-l] Offering to help   Kevin Clancy
• [Bioperl-l] How to run this "bp_search2gff.pl"   ajay
• [Bioperl-l] bioperl-run version   Koen van der Drift
• [Bioperl-l] bioperl-run version   Chris Fields
• [Bioperl-l] Offering to help   Chris Mungall
• [Bioperl-l] Remote Blast and Report   Ocar Campos
• [Bioperl-l] Opportunity: bioinformatics programmer/analyst at Stowers Institute for Medical Research   Cook, Malcolm
• [Bioperl-l] Primer3 help   Paolo Pavan
• [Bioperl-l] Primer3 help   Chris Fields
• [Bioperl-l] Regarding help for Bioperl on window server 2003   Jason Stajich
• [Bioperl-l] Regarding Bioperl help for windows server 2003   Sanjay Harke
• [Bioperl-l] Regarding Bioperl help for windows server 2003   Alden Huang
• [Bioperl-l] Regarding Bioperl help for windows server 2003   Spiros Denaxas
• [Bioperl-l] Help in Programming a substitution routine   manni122
• [Bioperl-l] Help in Programming a substitution routine   Torsten Seemann
• [Bioperl-l] Indexing HMMER reports   Toni Hermoso Pulido
• [Bioperl-l] Google Summer of Code: Call for Bio* Volunteers   Hilmar Lapp
• [Bioperl-l] Indexing HMMER reports   Jason Stajich
• [Bioperl-l] Indexing HMMER reports   Chris Fields
• [Bioperl-l] Google Summer of Code: Call for Bio* Volunteers   Hilmar Lapp
• [Bioperl-l] Google Summer of Code: Call for Bio* Volunteers   Mark A. Jensen
• [Bioperl-l] Google Summer of Code: Call for Bio* Volunteers   Hilmar Lapp
• [Bioperl-l] Google Summer of Code: Call for Bio* Volunteers   Chris Fields
• [Bioperl-l] Google Summer of Code: Call for Bio* Volunteers   Hilmar Lapp
• [Bioperl-l] Google Summer of Code: Call for Bio* Volunteers   Hilmar Lapp
• [Bioperl-l] Indexing HMMER reports   Mauricio Herrera Cuadra
• [Bioperl-l] Emboss factory script   shweta kagliwal
• [Bioperl-l] Indexing HMMER reports   Toni Hermoso Pulido
• [Bioperl-l] Indexing HMMER reports   Brian Osborne
• [Bioperl-l] Indexing HMMER reports   Chris Fields
• [Bioperl-l] Emboss factory script   Scott Markel
• [Bioperl-l] CPAN module?   Mark A. Jensen
• [Bioperl-l] Bio::Location::{Simple,Fuzzy} and "IN-BETWEEN"   George Hartzell
• [Bioperl-l] Degenerate primer calculation   Bruno Vecchi
• [Bioperl-l] Gene name to Accession id   gopu_36
• [Bioperl-l] How to access an array of codons   manni122
• [Bioperl-l] How to access an array of codons   Dave Messina
• [Bioperl-l] How to access an array of codons   Bruno Vecchi
• [Bioperl-l] How to access an array of codons   manni122
• [Bioperl-l] How to access an array of codons   Chris Fields
• [Bioperl-l] walk through array of two sequences splitted into codons   manni122
• [Bioperl-l] How to access an array of codons   Kevin Brown
• [Bioperl-l] Gene name to Accession id   Smithies, Russell
• [Bioperl-l] How to access an array of codons   Smithies, Russell
• [Bioperl-l] Gene name to Accession id   gopu_36
• [Bioperl-l] How to access an array of codons   manni122
• [Bioperl-l] script to calculate percentage identity for BLAT psl   gopu_36
• [Bioperl-l] [Bioperl-guts-l] [Bug 2789] Script submission: reverse translate Profam motifs   Brian Osborne
• [Bioperl-l] reading gff3?   Smithies, Russell
• [Bioperl-l] reading gff3?   Kevin Brown
• [Bioperl-l] reading gff3?   Scott Cain
• [Bioperl-l] reading gff3?   Smithies, Russell
• [Bioperl-l] minor bug in Bio::FeatureIO::gff   Smithies, Russell
• [Bioperl-l] minor bug in Bio::FeatureIO::gff   Chris Fields
• [Bioperl-l] Bio::Location::{Simple,Fuzzy} and "IN-BETWEEN"   Chris Fields
• [Bioperl-l] script to calculate percentage identity for BLAT psl   gopu_36
• [Bioperl-l] problem about format convertion   苏斐
• [Bioperl-l] Bio::Location::{Simple,Fuzzy} and "IN-BETWEEN"   Heikki Lehvaslaiho
• [Bioperl-l] Degenerate primer calculation   Heikki Lehvaslaiho
• [Bioperl-l] Extraction of exon, intron, promoter, UTR   Jens Lichtenberg
• [Bioperl-l] Extraction of exon, intron, promoter, UTR   Dave Messina
• [Bioperl-l] problem about format convertion   Dave Messina
• [Bioperl-l] Extraction of exon, intron, promoter, UTR   Jens Lichtenberg
• [Bioperl-l] Extraction of exon, intron, promoter, UTR   Dave Messina
• [Bioperl-l] Sliding window alignment How?   kenzy ken
• [Bioperl-l] Extraction of exon, intron, promoter, UTR   Hilmar Lapp
• [Bioperl-l] Bioperl-l Digest, Vol 71, Issue 6   Sanjay Harke
• [Bioperl-l] problem about format convertion   Dave Messina
• [Bioperl-l] problem about format convertion   Dave Messina
• [Bioperl-l] problem about format convertion   Chris Fields
• [Bioperl-l] Extraction of exon, intron, promoter, UTR   Chris Fields
• [Bioperl-l] Google Summer of Code: application submitted, action needed   Hilmar Lapp
• [Bioperl-l] script to calculate percentage identity for BLAT psl   gopu_36
• [Bioperl-l] script to calculate percentage identity for BLAT psl   Jason Stajich
• [Bioperl-l] script to calculate percentage identity for BLAT psl   gopu_36
• [Bioperl-l] Consulting project   Boris Umylny
• [Bioperl-l] script to calculate percentage identity for BLAT psl   Jason Stajich
• [Bioperl-l] script to calculate percentage identity for BLAT psl   gopu_36
• [Bioperl-l] script to calculate percentage identity for BLAT psl   gopu_36
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   Hilmar Lapp
• [Bioperl-l] genome position mapping of RefSeq IDs   Robert Citek
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   Chris Fields
• [Bioperl-l] CGI and BioPerl Re: Bioperl-l Digest, Vol 71, Issue 6   Chris Fields
• [Bioperl-l] Bio::DB::SeqFeature oddities   Blanchette, Marco
• [Bioperl-l] :DB::SeqFeature oddities   Cook, Malcolm
• [Bioperl-l] CGI and BioPerl Re: Bioperl-l Digest, Vol 71, Issue 6   Chris Fields
• [Bioperl-l] reformating dna sequence containing ambiguity symbols   Smithies, Russell
• [Bioperl-l] reformating dna sequence containing ambiguity symbols   Smithies, Russell
• [Bioperl-l] reformating dna sequence containing ambiguity symbols   Bernd Web
• [Bioperl-l] Problems with a while loop, please help   manni122
• [Bioperl-l] Problems with a while loop, please help   Mark A. Jensen
• [Bioperl-l] Problems with a while loop, please help   Dave Messina
• [Bioperl-l] reformating dna sequence containing ambiguity symbols   Chris Fields
• [Bioperl-l] Resources for Perl newbies   Mark A. Jensen
• [Bioperl-l] How to run this "bp_search2gff.pl"   Dan Bolser
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   Isabelle Phan
• [Bioperl-l] Resources for Perl newbies   Jay Hannah
• [Bioperl-l] Resources for Perl newbies   Chris Fields
• [Bioperl-l] Fwd: How to run this "bp_search2gff.pl"   Jason Stajich
• [Bioperl-l] Resources for Perl newbies   Mark A. Jensen
• [Bioperl-l] BLAST + BioPerl   Jason Stajich
• [Bioperl-l] Problems with a while loop, please help   Lincoln Stein
• [Bioperl-l] reformating dna sequence containing ambiguity symbols   Smithies, Russell
• [Bioperl-l] reformating dna sequence containing ambiguity symbols   Chris Fields
• [Bioperl-l] 2009 GMOD Summer Schools - Americas & Europe   Dave Clements
• [Bioperl-l] Primer3 Redux   Chris Fields
• [Bioperl-l] bl2seq   shweta kagliwal
• [Bioperl-l] RemoteBlast filter option   Xiang, Philip
• [Bioperl-l] RemoteBlast filter option   Smithies, Russell
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   iphan
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   Chris Fields
• [Bioperl-l] bl2seq   Mark A. Jensen
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   Isabelle Phan
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   Hilmar Lapp
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   Chris Fields
• [Bioperl-l] OBF application for Summer of Code has been rejected   Hilmar Lapp
• [Bioperl-l] [BioSQL-l] OBF application for Summer of Code has been rejected   Chris Fields
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Dan Bolser
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Phillip San Miguel
• [Bioperl-l] OBF application for Summer of Code has been rejected   Mark A. Jensen
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Dan Bolser
• [Bioperl-l] [BioSQL-l] OBF application for Summer of Code has been rejected   Hilmar Lapp
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   iphan
• [Bioperl-l] Fwd: [Gmod-ajax] Jbrowse on mac os 10.5   Chris Fields
• [Bioperl-l] Perl developer vacancy at WTSI   James Gilbert
• [Bioperl-l] Bio::Location::{Simple,Fuzzy} and "IN-BETWEEN"   George Hartzell
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Phillip San Miguel
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   albezg
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   Mark A. Jensen
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   Mark A. Jensen
• [Bioperl-l] Summer of Code 2009   Hilmar Lapp
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   Chris Fields
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   Mark A. Jensen
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   Chris Fields
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   Mark A. Jensen
• [Bioperl-l] bl2seq   Mark A. Jensen
• [Bioperl-l] Fwd: [blast-help] Fwd: Question about the definition of 'gaps' in blast -m8 output...   Dan Bolser
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Dan Bolser
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Dave Messina
• [Bioperl-l] Fwd: [blast-help] Fwd: Question about the definition of 'gaps' in blast -m8 output...   Chris Fields
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Chris Fields
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   Jay Hannah
• [Bioperl-l] Problems after changing display_id of a sequence in SimpleAlign   albezg
• [Bioperl-l] problem with bioperl-ext-1.4   nary raveloson
• [Bioperl-l] problem with bioperl-ext-1.4   Kevin Brown
• [Bioperl-l] problem with bioperl-ext-1.4   Lori G. Wilson
• [Bioperl-l] problem with bioperl-ext-1.4   Chris Fields
• [Bioperl-l] Bioperl-l Digest, Vol 71, Issue 11   Sanjay Harke
• [Bioperl-l] Regarding help for Bioperl with Local MYsql database   Sanjay Harke
• [Bioperl-l] Regarding help for Bioperl with Local MYsql database   Hilmar Lapp
• [Bioperl-l] Regarding help for Bioperl with Local MYsql database   Juan Jovel
• [Bioperl-l] Invitation/Proposal   Juan Jovel
• [Bioperl-l] sanjay Harke sent you a Friend Request on Yaari   sanjay Harke
• [Bioperl-l] sanjay Harke sent you a Friend Request on Yaari   sanjay Harke
• [Bioperl-l] sanjay Harke sent you a Friend Request on Yaari   sanjay Harke
• [Bioperl-l] Problems after changing display_id of a sequence in SimpleAlign   Jason Stajich
• [Bioperl-l] issues with Bio::SimpleAlign add_seq function   Mark A. Jensen
• [Bioperl-l] Shweta Kagliwal sent you a Friend Request on Yaari   Shweta Kagliwal
• [Bioperl-l] Summer of Code project idea: build-out of PopGen::Simulation::Coalescent   Mark A. Jensen
• [Bioperl-l] bl2seq   Mark A. Jensen
• [Bioperl-l] Summer of Code project idea: build-out of PopGen::Simulation::Coalescent   Jason Stajich
• [Bioperl-l] sanjay Harke sent you a Friend Request on Yaari   Hilmar Lapp
• [Bioperl-l] sanjay Harke sent you a Friend Request on Yaari   Abhishek Pratap
• [Bioperl-l] Summer of Code project idea: build-out of PopGen::Simulation::Coalescent   Mark A. Jensen
• [Bioperl-l] Summer of Code project idea: build-out of PopGen::Simulation::Coalescent   Chris Fields
• [Bioperl-l] Summer of Code project idea: build-out of PopGen::Simulation::Coalescent   Mark A. Jensen
• [Bioperl-l] Summer of Code project idea: build-out of PopGen::Simulation::Coalescent   Jason Stajich
• [Bioperl-l] Summer of Code project idea: build-out of PopGen::Simulation::Coalescent   Mark A. Jensen
• [Bioperl-l] Summer of Code project idea: build-out of PopGen::Simulation::Coalescent   Jonathan Leto
• [Bioperl-l] fit genomic coordinates   Laurent Manchon
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Phillip San Miguel
• [Bioperl-l] Summer of Code project idea: build-out ofPopGen::Simulation::Coalescent   Mark A. Jensen
• [Bioperl-l] bioperl.org (and open-bio.org) websites down?   Scott Cain
• [Bioperl-l] Question about the definition of 'gaps' in blast -m8 output...   Dan Bolser
• [Bioperl-l] problem to fit genomic coordinates   Laurent MANCHON
• [Bioperl-l] problem to fit genomic coordinates   Kevin Brown
• [Bioperl-l] Rosetta Academic Training Webinar   Nir London
• [Bioperl-l] problem to fit genomic coordinates   Kevin Brown
• [Bioperl-l] Parsing Blast Report   shalabh sharma
• [Bioperl-l] Parsing Blast Report   Mark A. Jensen
• [Bioperl-l] Parsing Blast Report   Scott Markel
• [Bioperl-l] problem to fit genomic coordinates   Laurent Manchon
• [Bioperl-l] Parsing Blast Report   shalabh sharma
• [Bioperl-l] problem to fit genomic coordinates   Chris Fields
• [Bioperl-l] problem to fit genomic coordinates   Laurent MANCHON
• [Bioperl-l] problem to fit genomic coordinates   Chris Fields
• [Bioperl-l] thanks wiki-slayers   Mark A. Jensen
• [Bioperl-l] thanks wiki-slayers   Chris Fields
• [Bioperl-l] problem to fit genomic coordinates   Laurent MANCHON
• [Bioperl-l] problem to fit genomic coordinates   Chris Fields
• [Bioperl-l] problem to fit genomic coordinates   Felipe Figueiredo
• [Bioperl-l] problem to fit genomic coordinates   Chris Fields
• [Bioperl-l] problem to fit genomic coordinates   Scott Cain
• [Bioperl-l] problem to fit genomic coordinates   Laurent MANCHON
• [Bioperl-l] problem to fit genomic coordinates   Sean Davis
• [Bioperl-l] problem to fit genomic coordinates   Chris Fields
• [Bioperl-l] Organism Classification   shalabh sharma
• [Bioperl-l] Organism Classification   michael watson (IAH-C)
• [Bioperl-l] problem to fit genomic coordinates   Mark A. Jensen
• [Bioperl-l] problem to fit genomic coordinates   Smithies, Russell
• [Bioperl-l] thanks wiki-slayers   Jason Stajich
• [Bioperl-l] Question about parsing a gb file   Paolo Pavan
• [Bioperl-l] Bioperl-l Digest, Vol 71, Issue 15   Govind Chandra
• [Bioperl-l] Bioperl-l Digest, Vol 71, Issue 15   Mark A. Jensen
• [Bioperl-l] Bio::AnnotatableI function annotation()   Govind Chandra
• [Bioperl-l] Bio::AnnotatableI function annotation()   Mark A. Jensen
• [Bioperl-l] Bio::AnnotatableI function annotation()   Govind Chandra
• [Bioperl-l] Bio::AnnotatableI function annotation()   Mark A. Jensen
• [Bioperl-l] Bio::AnnotatableI function annotation()   Hilmar Lapp
• [Bioperl-l] Bio::AnnotatableI function annotation()   Mark A. Jensen
• [Bioperl-l] Bio::AnnotatableI function annotation()   Chris Fields
• [Bioperl-l] Bio::AnnotatableI function annotation()   Chris Fields
• [Bioperl-l] Bio::AnnotatableI function annotation()   Mark A. Jensen
• [Bioperl-l] Bio::AnnotatableI function annotation()   Chris Fields
• [Bioperl-l] Bio::AnnotatableI function annotation()   Chris Fields
• [Bioperl-l] Bio::AnnotatableI function annotation()   Chris Fields
• [Bioperl-l] Bio::AnnotatableI function annotation()   Mark A. Jensen
• [Bioperl-l] Bio::AnnotatableI function annotation()   Chris Fields
• [Bioperl-l] Bio::AnnotatableI function annotation()   Mark A. Jensen
• [Bioperl-l] bioperl-dev goes live!   Mark A. Jensen
• [Bioperl-l] Query about Bioperl and Mysql   Sanjay Harke
• [Bioperl-l] bioperl-dev goes live!   Chris Fields
• [Bioperl-l] Bio::AnnotatableI function annotation()   Hilmar Lapp
• [Bioperl-l] Bio::AnnotatableI function annotation()   Hilmar Lapp
• [Bioperl-l] Bio::AnnotatableI function annotation()   Hilmar Lapp
• [Bioperl-l] bioperl-dev goes live!   Mark A. Jensen
• [Bioperl-l] Proposal for documentation generation   Pjotr Prins
• [Bioperl-l] Reminder: Student application deadline for Summer of Code 2009   Hilmar Lapp
• [Bioperl-l] Question about parsing a gb file   Torsten Seemann
• [Bioperl-l] Question about parsing a gb file   Mark A. Jensen
• [Bioperl-l] bioperl-dev goes live!   Mark A. Jensen
• [Bioperl-l] Bio::AnnotatableI function annotation()   Mark A. Jensen
• [Bioperl-l] 2009 GMOD Summer Schools - Americas & Europe   Dave Clements
• [Bioperl-l] Bio::AnnotatableI function annotation()   Govind Chandra
• [Bioperl-l] Bio::AnnotatableI function annotation()   Mark A. Jensen
• [Bioperl-l] Bio::AnnotatableI function annotation()   Brian Osborne
• [Bioperl-l] reading and writing tree   Peter Menzel
• [Bioperl-l] reading and writing tree   Mark A. Jensen
• [Bioperl-l] reading and writing tree   Mark A. Jensen
• [Bioperl-l] taxonomy ID   shalabh sharma
• [Bioperl-l] taxonomy ID   Smithies, Russell
• [Bioperl-l] Bioperl-l Digest, Vol 71, Issue 15   demis001

Last message date: Tue Mar 31 22:59:45 UTC 2009
Archived on: Mon Jun 16 02:50:11 UTC 2014

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