[Bioperl-l] issues with Bio::SimpleAlign add_seq function

[albezg]

Hi all,
I'm using bioperl-1.6. Here are some things that bother me about
Bio::SimpleAlign add_seq function

1) Sequence order is counted from 0 not 1, unlike in other functions,
such as get_seq_by_pos and select.
2) If position $order is already occupied then the old sequence is
removed. Is there a way to insert a new sequence in the middle of an
alignment?

Alexandr