[Bioperl-l] bl2seq

[Mark A. Jensen]

See the new scrap at
http://www.bioperl.org/wiki/Parsing_BLAST_HSPs
cheers, MAJ
----- Original Message ----- 
From: "shweta kagliwal" <shwetakagliwal at gmail.com>
To: <bioperl-l at bioperl.org>
Sent: Tuesday, March 17, 2009 7:01 AM
Subject: [Bioperl-l] bl2seq


>I want to carry out pairwise blast using bl2seq program in bioperl. I have
> installed bioperl-1.5.9.
> I have also installed standalone blast from ncbi ftp in my perl/bin folder.
> But when I run the attached script I get the following error-
>
> ref:
> cant locate method "next feature" via package "Bio:SearchIO:blast" at
> bl2seq1.pl  line 20, <GEN2> line 1.
> Error removing C:\DOCUME~1\ADMINI~1\LOCALS~1\Temp\qPx195u5TQ at
> c:/perl/site/lib/File/Temp.pm line 890.
>
>
> I cant get the error. Please help me.
>


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