[Bioperl-l] Emboss factory script

[shweta kagliwal]

I want to use Emboss programs.
I tried running the attached script.
But I get a warning:

Msg: Application [water] is not available.
can't call method "run" on an undefined value at bpe.pl line 15.

I am not able to understand the problem. I just want to make pairwise
alignments using emboss programs 'water' and 'needle' programatically.
Please help me.
Thanks.
-------------- next part --------------
A non-text attachment was scrubbed...
Name: bpe1.pl
Type: application/octet-stream
Size: 1103 bytes
Desc: not available
URL: <http://lists.open-bio.org/pipermail/bioperl-l/attachments/20090310/5a0c1201/attachment-0004.obj>