[Bioperl-l] Regarding Bioperl help for windows server 2003
Sanjay Harke
sanjay.harke at gmail.com
Mon Mar 9 07:04:21 UTC 2009
I am sanjay harke from India. I am working in MGM School of Health
Sciences, India as associate Professor in department of Bioinformatics
and Biotecnology. Presently i am working on database development of
Plant proteins In that regard i am presuing Bioperl script. I know
very well Perl, PHP, CGI... But i am not getting image with the help of
Bio::Graphics for bioperl module execution on window 2003 server. Is
it possible to you all to help me out.following script is not working
properly on window 2003 server.
----------------------------------------------------------------------------
#!/usr/local/bin/perl
# This is code example 1 in the Graphics-HOWTO
# data1.txt file
use strict;
use Bio::Graphics;
use Bio::SeqFeature::Generic;
my $panel = Bio::Graphics::Panel->new(-length => 1000,-width => 800);
my $track = $panel->add_track(-glyph => 'generic',-label => 1);
while (<>) { # read blast file
chomp;
next if /^\#/; # ignore comments
my($name,$score,$start,$end) = split /\t+/;
my $feature = Bio::SeqFeature::Generic->new(
-display_name => $name,
-score => $score,
-start => $start,
-end => $end
);
$track->add_feature($feature);
}
print $panel->png;
------------------------------------------------------------
So, kindly help me out for this problem.
thanking you
yours truly
sanjay harke
More information about the Bioperl-l
mailing list