[Bioperl-l] taxonomy ID

shalabh sharma shalabh.sharma7 at gmail.com
Tue Mar 31 18:42:51 UTC 2009


Hi All,
          I am writing a script, for one of its part i have to parse a blast
report (refseq blast) and check how may organisms are eukaryotes and how
namy of them are prokaryotes.
I am using BIO::DB::taxinomy module:
http://www.bioperl.org/wiki/Module:Bio::DB::Taxonomy

But for this i need a taxonomyid (like '33090') given in the example.
So is it possible to get a taxonomyid from refseq balst report?
If not then how i can deal with this problem?

i would really appreciate if anyone can help me out.

Thanks
Shalabh



More information about the Bioperl-l mailing list