July 2010 Archives by subject
Starting: Thu Jul 1 14:45:01 UTC 2010
Ending: Sat Jul 31 20:56:49 UTC 2010
Messages: 264
- [Bioperl-l] 85% ATGCN
armendarez77 at hotmail.com
- [Bioperl-l] 85% ATGCN
Roy Chaudhuri
- [Bioperl-l] 85% ATGCN
Chris Fields
- [Bioperl-l] 85% ATGCN
armendarez77 at hotmail.com
- [Bioperl-l] [bug 3120] Bio::DB::SeqFeature::Store::DBI::SQLite + bp_seqfeature_gff3.PLS = unhappy?
John Anderson
- [Bioperl-l] [bug 3120] Bio::DB::SeqFeature::Store::DBI::SQLite + bp_seqfeature_gff3.PLS = unhappy?
John Anderson
- [Bioperl-l] [bug 3120] Bio::DB::SeqFeature::Store::DBI::SQLite + bp_seqfeature_gff3.PLS = unhappy?
Chris Fields
- [Bioperl-l] [bug 3120] Bio::DB::SeqFeature::Store::DBI::SQLite + bp_seqfeature_gff3.PLS = unhappy?
John Anderson
- [Bioperl-l] [bug 3120] Bio::DB::SeqFeature::Store::DBI::SQLite + bp_seqfeature_gff3.PLS = unhappy?
Dave Messina
- [Bioperl-l] [bug 3120] Bio::DB::SeqFeature::Store::DBI::SQLite + bp_seqfeature_gff3.PLS = unhappy?
Chris Fields
- [Bioperl-l] [bug 3120] Bio::DB::SeqFeature::Store::DBI::SQLite + bp_seqfeature_gff3.PLS = unhappy?
Jay Hannah
- [Bioperl-l] [Gmod-gbrowse] Difference between "-adaptor memory" and "-adaptor DBI::mysql"
Dan Bolser
- [Bioperl-l] [Gmod-gbrowse] Difference between "-adaptor memory" and "-adaptor DBI::mysql"
Dan Bolser
- [Bioperl-l] [Gmod-gbrowse] Difference between "-adaptor memory" and "-adaptor DBI::mysql"
Jason Stajich
- [Bioperl-l] Accessing karyotype data from Ensembl
Ycart
- [Bioperl-l] Accessing karyotype data from Ensembl
Chris Fields
- [Bioperl-l] added -type for Bio::Annotation::DBLink
Dave Messina
- [Bioperl-l] best method for dealing with hg18 seq-features in a relational database?
Jonathan Epstein
- [Bioperl-l] best method for dealing with hg18 seq-features in a relational database?
Robert Buels
- [Bioperl-l] best method for dealing with hg18 seq-features in a relational database?
Chris Fields
- [Bioperl-l] best method for dealing with hg18 seq-features in a relational database?
Hilmar Lapp
- [Bioperl-l] Bio::Biblio::IO copyright parsing
Yulia Bushmanova
- [Bioperl-l] Bio::Biblio::IO copyright parsing
Chris Fields
- [Bioperl-l] Bio::DB::GenBank question
Jason Stajich
- [Bioperl-l] Bio::DB::GenBank question
Chris Fields
- [Bioperl-l] BioPerl at 15 poster from ISMB 2010
Mark A. Jensen
- [Bioperl-l] BioPerl at 15 poster from ISMB 2010
Hilmar Lapp
- [Bioperl-l] BioPerl at 15 poster from ISMB 2010
Chris Fields
- [Bioperl-l] BioPerl at 15 poster from ISMB 2010
Adam Sjøgren
- [Bioperl-l] bioperl modules
Shachi Gahoi
- [Bioperl-l] bioperl modules
Shachi Gahoi
- [Bioperl-l] bioperl modules
Giles Weaver
- [Bioperl-l] bioperl modules
Chris Fields
- [Bioperl-l] BioPerl Switching to GitHub Organization
Chris Fields
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Pablo Marin-Garcia
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Chris Fields
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Dave Messina
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Pablo Marin-Garcia
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Chris Fields
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Chris Fields
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Pablo Marin-Garcia
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Chris Fields
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Pablo Marin-Garcia
- [Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'
Dave Messina
- [Bioperl-l] Bioperl-l Digest, Vol 87, Issue 20
Tom Keller
- [Bioperl-l] Bioperl-l Digest, Vol 87, Issue 41
Ping Yao
- [Bioperl-l] Bioperl-l Digest, Vol 87, Issue 41
Kevin Brown
- [Bioperl-l] BLAT Howto?
Heikki Lehvaslaiho
- [Bioperl-l] BOSC 2010 BioPerl slides
Chris Fields
- [Bioperl-l] bp_genbank2gff3.pl
David Breimann
- [Bioperl-l] bp_genbank2gff3.pl
Chris Mungall
- [Bioperl-l] bp_genbank2gff3.pl error on last line ("//")
David Breimann
- [Bioperl-l] bp_genbank2gff3.pl error on last line ("//")
John Anderson
- [Bioperl-l] bp_genbank2gff3.pl error on last line ("//")
Chris Fields
- [Bioperl-l] bp_genbank2gff3.pl error on last line ("//")
David Breimann
- [Bioperl-l] bp_genbank2gff3.pl error on last line ("//")
John Anderson
- [Bioperl-l] bp_genbank2gff3.pl error on last line ("//")
Peter
- [Bioperl-l] bp_genbank2gff3.pl error on last line ("//")
Chris Fields
- [Bioperl-l] Bug in Bio/DB/SeqFeature/Store/DBI/mysql.pm (attached patch)
Lincoln Stein
- [Bioperl-l] Bug in Bio/DB/SeqFeature/Store/DBI/mysql.pm (attached patch)
Dan Bolser
- [Bioperl-l] Bug in Bio::DB::SeqFeature::Store::DBI::mysql.pm (attached patch)
Dan Bolser
- [Bioperl-l] Bug in Bio::DB::SeqFeature::Store::DBI::mysql.pm (attached patch)
Lincoln Stein
- [Bioperl-l] Bug in Contig.pm? How to compare two sequence objects?
Robson de Souza
- [Bioperl-l] Bug in Contig.pm? How to compare two sequence objects?
Dan Bolser
- [Bioperl-l] Bug in Contig.pm? How to compare two sequence objects?
Robson de Souza
- [Bioperl-l] Bug in Contig.pm? How to compare two sequence objects?
Dan Bolser
- [Bioperl-l] Bug in Contig.pm? How to compare two sequence objects?
Chris Fields
- [Bioperl-l] Bug in Contig.pm? How to compare two sequence objects?
Dan Bolser
- [Bioperl-l] Coordinate converter?
Dan Bolser
- [Bioperl-l] Coordinate converter?
Jason Stajich
- [Bioperl-l] Coordinate converter?
Dan Bolser
- [Bioperl-l] Coordinate converter?
Dave Messina
- [Bioperl-l] Coordinate converter?
Dan Bolser
- [Bioperl-l] Coordinate converter?
Dave Messina
- [Bioperl-l] Coordinate converter?
Peter
- [Bioperl-l] Coordinate converter?
Dan Bolser
- [Bioperl-l] Coordinate converter?
Chris Fields
- [Bioperl-l] Difference between "-adaptor memory" and "-adaptor DBI::mysql"
Dan Bolser
- [Bioperl-l] Difference between "-adaptor memory" and "-adaptor DBI::mysql"
Chris Fields
- [Bioperl-l] Difference between "-adaptor memory" and "-adaptor DBI::mysql"
Dan Bolser
- [Bioperl-l] Download sequence by genomic location
Peng Yu
- [Bioperl-l] Download sequence by genomic location
Chris Fields
- [Bioperl-l] Download sequence by genomic location
Chris Fields
- [Bioperl-l] Download sequence by genomic location
Sean Davis
- [Bioperl-l] Download sequence by genomic location
Peng Yu
- [Bioperl-l] Download sequence by genomic location
Chris Fields
- [Bioperl-l] Error converting FASTQ(ASCII-64 ) to Sanger(ASCII-33) using Bio:SeqIO
Peter
- [Bioperl-l] Error converting FASTQ(ASCII-64 ) to Sanger(ASCII-33) using Bio:SeqIO
Peter
- [Bioperl-l] Error converting FASTQ(ASCII-64 ) to Sanger(ASCII-33) using Bio:SeqIO
Chris Fields
- [Bioperl-l] Error converting FASTQ(ASCII-64 ) to Sanger(ASCII-33) using Bio:SeqIO
Abhishek Pratap
- [Bioperl-l] Error converting FASTQ(ASCII-64 ) to Sanger(ASCII-33) using Bio:SeqIO
Abhishek Pratap
- [Bioperl-l] Error when Using BLAT????
Chris Fields
- [Bioperl-l] extract taxonomy from Bio::Tree::NodeI objects...
mark alston (TGAC)
- [Bioperl-l] extract taxonomy from Bio::Tree::NodeI objects...
Chris Fields
- [Bioperl-l] Final BioPerl 1.6 release
Chris Fields
- [Bioperl-l] Final BioPerl 1.6 release
Robert Buels
- [Bioperl-l] Final BioPerl 1.6 release
Chris Fields
- [Bioperl-l] Final BioPerl 1.6 release
Jonathan Leto
- [Bioperl-l] Finding mutations in Blast files
Gabriel Ab
- [Bioperl-l] Finding mutations in Blast files
Chris Fields
- [Bioperl-l] Fw: BioPerl at 15 poster from ISMB 2010
Mark A. Jensen
- [Bioperl-l] Fw: BioPerl at 15 poster from ISMB 2010
Mark A. Jensen
- [Bioperl-l] Fw: BioPerl at 15 poster from ISMB 2010
Roy Chaudhuri
- [Bioperl-l] Fw: BioPerl at 15 poster from ISMB 2010
Mark A. Jensen
- [Bioperl-l] Fw: BioPerl at 15 poster from ISMB 2010
Chris Fields
- [Bioperl-l] Fwd: Fwd: gene extraction script
Adam Witney
- [Bioperl-l] Fwd: Codefest 2010: Final details
Christopher Bottoms
- [Bioperl-l] Fwd: gene extraction script
Florent Angly
- [Bioperl-l] Fwd: gene extraction script
Adam Witney
- [Bioperl-l] Fwd: gene extraction script
Jun Yin
- [Bioperl-l] Fwd: Re: How to Obtain Nucleotide Sequence from SeqIO::fastq
Roy Chaudhuri
- [Bioperl-l] Get GIs from Taxonomy ID
armendarez77 at hotmail.com
- [Bioperl-l] Get GIs from Taxonomy ID
Brian Osborne
- [Bioperl-l] getting only the aminoacids for a domain
José Ramón Blas Pastor
- [Bioperl-l] How to convert SFF into Fastq
Juan Jovel
- [Bioperl-l] How to convert SFF into Fastq
Peter
- [Bioperl-l] How to convert SFF into Fastq
Chris Fields
- [Bioperl-l] How to convert SFF into Fastq
Dan Bolser
- [Bioperl-l] How to extract corresponding human genome sequence using mouse genome coordination
ncRNA
- [Bioperl-l] How to extract corresponding human genome sequence using mouse genome coordination
Chris Fields
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Alan Twaddle
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Roy Chaudhuri
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Alan Twaddle
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Roy Chaudhuri
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Alan Twaddle
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Peter
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Chris Fields
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Dave Messina
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Alan Twaddle
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Roy Chaudhuri
- [Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq
Alan Twaddle
- [Bioperl-l] Infernal parser
Marcela Davila
- [Bioperl-l] Infernal parser
Chris Fields
- [Bioperl-l] Infernal parser
Chris Fields
- [Bioperl-l] Inquiry on OrthoMCL
Mark A. Jensen
- [Bioperl-l] Inquiry on OrthoMCL
Aaron Mackey
- [Bioperl-l] Inquiry on OrthoMCL
Chris Fields
- [Bioperl-l] Inquiry on OrthoMCL
Mark A. Jensen
- [Bioperl-l] install cpan on mac os x
José Ramón Blas Pastor
- [Bioperl-l] install cpan on mac os x
Adam Witney
- [Bioperl-l] install cpan on mac os x
José Ramón Blas Pastor
- [Bioperl-l] install cpan on mac os x
Adam Witney
- [Bioperl-l] installing bioperl
Carrie O'Malley
- [Bioperl-l] installing bioperl
Robson de Souza
- [Bioperl-l] installing bioperl
Adam Witney
- [Bioperl-l] installing bioperl
Warren W. Kretzschmar
- [Bioperl-l] Installing Bioperl on Ubuntu and Mac OS X Snow Leopard (perl 5.10.0)
Chris Fields
- [Bioperl-l] Installing Bioperl on Ubuntu and Mac OS X Snow Leopard (perl 5.10.0)
Steffen Möller
- [Bioperl-l] Installing Bioperl on Ubuntu and Mac OS X Snow Leopard (perl 5.10.0)
George Iatropoulos
- [Bioperl-l] Installing Bioperl on Ubuntu and Mac OS X Snow Leopard (perl 5.10.0)
Kai Blin
- [Bioperl-l] installing Bioperl-ext package (Bio::Tools::pSW)
Evelyne
- [Bioperl-l] Installing bioperl-l at bioperl.org
Mr. James P. Dunlop (Contractor)
- [Bioperl-l] Installing bioperl-l at bioperl.org
John Anderson
- [Bioperl-l] Installing bioperl-l at bioperl.org
Chris Fields
- [Bioperl-l] Intergenic regions
shalabh sharma
- [Bioperl-l] Intergenic regions
Adam Witney
- [Bioperl-l] Intergenomic sequences
shalu sharma
- [Bioperl-l] Jaccard Dendrogram
Rondon Neto
- [Bioperl-l] Jaccard Dendrogram
Dave Messina
- [Bioperl-l] Job opening at Eagle
Richard Holland
- [Bioperl-l] MSG: Unrecognized DBSOURCE data: pdb: molecule
snoze pa
- [Bioperl-l] Muscle Alignment and Memory Allocation
armendarez77 at hotmail.com
- [Bioperl-l] Muscle Alignment and Memory Allocation
Kevin Brown
- [Bioperl-l] Muscle Alignment and Memory Allocation
Kai Blin
- [Bioperl-l] Muscle Alignment and Memory Allocation
randalls at bioinfo.wsu.edu
- [Bioperl-l] Muscle Alignment and Memory Allocation
armendarez77 at hotmail.com
- [Bioperl-l] Muscle Alignment and Memory Allocation
Dave Messina
- [Bioperl-l] Muscle Alignment and Memory Allocation
Jason Stajich
- [Bioperl-l] Muscle Alignment and Memory Allocation
armendarez77 at hotmail.com
- [Bioperl-l] New Bio::Root::IO->_insert() method
Florent Angly
- [Bioperl-l] Newbie question installing on MacOSX
James
- [Bioperl-l] Newbie question installing on MacOSX
Adam Witney
- [Bioperl-l] Newbie question installing on MacOSX
Roy Chaudhuri
- [Bioperl-l] Newbie question installing on MacOSX
Roy Chaudhuri
- [Bioperl-l] Newbie question installing on MacOSX
James Platt
- [Bioperl-l] Newbie question: getting latest version and keeping up to date
Dan Bolser
- [Bioperl-l] Newbie question: getting latest version and keeping up to date
David B
- [Bioperl-l] No error message is given for a warning (EUtilities)
Peng Yu
- [Bioperl-l] No error message is given for a warning (EUtilities)
Chris Fields
- [Bioperl-l] No error message is given for a warning (EUtilities)
Peng Yu
- [Bioperl-l] No error message is given for a warning (EUtilities)
Chris Fields
- [Bioperl-l] No error message is given for a warning (EUtilities)
Peng Yu
- [Bioperl-l] No error message is given for a warning (EUtilities)
Chris Fields
- [Bioperl-l] No error message is given for a warning (EUtilities)
Smithies, Russell
- [Bioperl-l] No error message is given for a warning (EUtilities)
Peng Yu
- [Bioperl-l] No error message is given for a warning (EUtilities)
Chris Fields
- [Bioperl-l] No error message is given for a warning (EUtilities)
Smithies, Russell
- [Bioperl-l] No error message is given for a warning (EUtilities)
Smithies, Russell
- [Bioperl-l] Parsing Alternative Splicing Gene information from Genbank file using Bioperl
AMRITA VISDOM
- [Bioperl-l] Parsing Alternative Splicing Gene information from Genbank file using Bioperl
Dave Messina
- [Bioperl-l] Parsing Alternative Splicing Gene information from Genbank file using Bioperl
Amritavisdom
- [Bioperl-l] perl one-liner with Bio::SeqIO
Alper Yilmaz
- [Bioperl-l] perl one-liner with Bio::SeqIO
Frank Schwach
- [Bioperl-l] perl one-liner with Bio::SeqIO
Roy Chaudhuri
- [Bioperl-l] perl one-liner with Bio::SeqIO
Chris Fields
- [Bioperl-l] perl one-liner with Bio::SeqIO
Roy Chaudhuri
- [Bioperl-l] perl one-liner with Bio::SeqIO
Stefan Kirov
- [Bioperl-l] perl one-liner with Bio::SeqIO
Aaron Mackey
- [Bioperl-l] perl one-liner with Bio::SeqIO
Stefan Kirov
- [Bioperl-l] perl one-liner with Bio::SeqIO
Chris Fields
- [Bioperl-l] perl one-liner with Bio::SeqIO
Stefan Kirov
- [Bioperl-l] Perl Web Crawling
chirag matkar
- [Bioperl-l] Perl Web Crawling
Chris Fields
- [Bioperl-l] Perl Web Crawling
Robert Buels
- [Bioperl-l] Perl Web Crawling
Roy Chaudhuri
- [Bioperl-l] phyloxml and element order
Frédéric Romagné
- [Bioperl-l] Posterior (and other values) from BEAST/treeannotator/FigTree tree nodes
Chris Fields
- [Bioperl-l] Posterior (and other values) from BEAST/treeannotator/FigTree tree nodes
Greg Baillie
- [Bioperl-l] Posterior (and other values) from BEAST/treeannotator/FigTree tree nodes
Jason Stajich
- [Bioperl-l] Posterior (and other values) from BEAST/treeannotator/FigTree tree nodes
Greg Baillie
- [Bioperl-l] Re ad in a Qual File like a Fasta?
twaddlac
- [Bioperl-l] Re ad in a Qual File like a Fasta?
Robert Buels
- [Bioperl-l] Recoding Bio::SimpleAlign
Jun Yin
- [Bioperl-l] Recoding Bio::SimpleAlign
Bernd Web
- [Bioperl-l] Recoding Bio::SimpleAlign
Chris Fields
- [Bioperl-l] Recoding Bio::SimpleAlign
Hilmar Lapp
- [Bioperl-l] Recoding Bio::SimpleAlign
Jun Yin
- [Bioperl-l] Regarding RemoteBlast: Getting error "Cannot accept request, error code: -103"
sheetal gosrani
- [Bioperl-l] Regarding RemoteBlast: Getting error "Cannot accept request, error code: -103"
Chris Fields
- [Bioperl-l] Regarding RemoteBlast: Getting error "Cannot accept request, error code: -103"
sheetal gosrani
- [Bioperl-l] Regarding RemoteBlast: Getting error "Cannot accept request, error code: -103"
Chris Fields
- [Bioperl-l] Regarding RemoteBlast: Getting error "Cannot accept request, error code: -103"
sheetal gosrani
- [Bioperl-l] Regarding RemoteBlast: Getting error "Cannot accept request, error code: -103"
sheetal gosrani
- [Bioperl-l] Regarding RemoteBlast: Getting error "Cannot accept request, error code: -103"
Chris Fields
- [Bioperl-l] reroot looses branch information
Robson de Souza
- [Bioperl-l] Restriction Analysis
Vidya Oruganti
- [Bioperl-l] Run wrappers for BWA and Samtools
Albert Vilella
- [Bioperl-l] Running Smith Waterman alignments in BioPerl
Evelyne
- [Bioperl-l] Running Smith Waterman alignments in BioPerl
Peter
- [Bioperl-l] Running Smith Waterman alignments in BioPerl
Evelyne
- [Bioperl-l] Running Smith Waterman alignments in BioPerl
Chris Fields
- [Bioperl-l] Running Smith Waterman alignments in BioPerl
Peter
- [Bioperl-l] Running Smith Waterman alignments in BioPerl
Evelyne
- [Bioperl-l] Seeking comments, Bio::Species memleak fix
Chris Fields
- [Bioperl-l] Seeking comments, Bio::Species memleak fix
Hilmar Lapp
- [Bioperl-l] Seeking comments, Bio::Species memleak fix
Chris Fields
- [Bioperl-l] SeqIO tag/location question
Tom Keller
- [Bioperl-l] SeqIO tag/location question
Chris Fields
- [Bioperl-l] SOAP Eutilities
Robson de Souza
- [Bioperl-l] StandAloneBlast & BLAST+
Matthew Laird
- [Bioperl-l] StandAloneBlast & BLAST+
Chris Fields
- [Bioperl-l] StandAloneBlast & BLAST+
Mark A. Jensen
- [Bioperl-l] StandAloneBlast & BLAST+
Matthew Laird
- [Bioperl-l] StandAloneBlast & BLAST+
Chris Fields
- [Bioperl-l] Suggestion for a new script: bp_repeat_mask_sequence.pl
Brian Osborne
- [Bioperl-l] Suggestion for a new script: bp_repeat_mask_sequence.pl
Dan Bolser
- [Bioperl-l] Suggestion for a new script: bp_repeat_mask_sequence.pl
Brian Osborne
- [Bioperl-l] Suggestion for a new script: bp_repeat_mask_sequence.pl
Dan Bolser
- [Bioperl-l] Suggestion for a new script: bp_repeat_mask_sequence.pl
Dan Bolser
- [Bioperl-l] Trouble in converting abi files to phd files by Bio::SeqIO
陳彥璋
- [Bioperl-l] Trouble in converting abi files to phd files by Bio::SeqIO
陳彥璋
- [Bioperl-l] Trouble in converting abi files to phd files by Bio::SeqIO
Chris Fields
- [Bioperl-l] Trouble in converting abi files to phd files by Bio::SeqIO
Aaron Mackey
- [Bioperl-l] Trouble in converting abi files to phd files by Bio::SeqIO
Chris Fields
- [Bioperl-l] Trouble in converting abi files to phd files by Bio::SeqIO
Aaron Mackey
- [Bioperl-l] What implements SeqFeatureI?
Dan Bolser
- [Bioperl-l] What implements SeqFeatureI?
Scott Cain
- [Bioperl-l] What implements SeqFeatureI?
Dan Bolser
- [Bioperl-l] What implements SeqFeatureI?
Scott Cain
- [Bioperl-l] What implements SeqFeatureI?
Dan Bolser
- [Bioperl-l] What implements SeqFeatureI?
Chris Fields
- [Bioperl-l] What implements SeqFeatureI?
Dan Bolser
- [Bioperl-l] What implements SeqFeatureI?
Chris Fields
- [Bioperl-l] What implements SeqFeatureI?
Dan Bolser
Last message date:
Sat Jul 31 20:56:49 UTC 2010
Archived on: Mon Jun 16 02:50:44 UTC 2014
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