[Bioperl-l] install cpan on mac os x
Adam Witney
awitney at sgul.ac.uk
Wed Jul 14 13:36:45 UTC 2010
looks like its failing to install PMQS/IO-Compress-2.027.tar.gz. Try installing it on its own
cpan> install PMQS/IO-Compress-2.027.tar.gz
On 14 Jul 2010, at 14:29, José Ramón Blas Pastor wrote:
> I follow instructions at http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix
>
> When I do:
> >perl -MCPAN -e shell
> cpan> install Bundle::CPAN
>
> ...answer Yes to all... and the last lines of my installation are:
>
> t/cz-06gzsetp.t (Wstat: 65280 Tests: 0 Failed: 0)
> Non-zero exit status: 255
> Parse errors: No plan found in TAP output
> t/cz-08encoding.t (Wstat: 65280 Tests: 1 Failed: 1)
> Failed test: 1
> Non-zero exit status: 255
> Parse errors: Bad plan. You planned 29 tests but ran 1.
> t/cz-14gzopen.t (Wstat: 65280 Tests: 2 Failed: 1)
> Failed test: 1
> Non-zero exit status: 255
> Parse errors: Bad plan. You planned 255 tests but ran 2.
> Files=85, Tests=9260, 9 wallclock secs ( 1.09 usr 0.22 sys + 7.19 cusr 0.92 csys = 9.42 CPU)
> Result: FAIL
> Failed 67/85 test programs. 34/9260 subtests failed.
> make: *** [test_dynamic] Error 255
> PMQS/IO-Compress-2.027.tar.gz
> /usr/bin/make test -- NOT OK
> //hint// to see the cpan-testers results for installing this module, try:
> reports PMQS/IO-Compress-2.027.tar.gz
> Running make install
> make test had returned bad status, won't install without force
> Failed during this command:
> ADAMK/File-HomeDir-0.91.tar.gz : make_test NO
> PMQS/IO-Compress-2.027.tar.gz : make_test NO
>
> ...any hint on where my failure comes from is appreciated.
>
> More info:
> Mac OS X 10.4
> Xcode developer tools installed
>
> Thanks,
>
> JR
>
> El 14 de julio de 2010 14:09, Adam Witney <awitney at sgul.ac.uk> escribió:
>
> I have always found the CPAN route the best way of installing BioPerl on OSX.
>
> If you are having problems doing this then try posting any errors and someone may be able to help
>
> adam
>
>
> On 14 Jul 2010, at 11:35, José Ramón Blas Pastor wrote:
>
> > Hi,
> > I have found several problems when installing CPAN in Mac OS X (version
> > 10.6.4) previous to install Bioperl.
> >
> > What's the best choice for installing Bioperl on Mac OS X? I had it
> > installed by using fink, but several modules are not found, I prefer a Unix
> > installation. Is there any trick that I have to bear in mind?
> >
> > Thanks,
> >
> > JR
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
>
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