[Bioperl-l] Running Smith Waterman alignments in BioPerl

[Peter]

On Thu, Jul 22, 2010 at 2:57 PM, Evelyne <evelyne.c88 at gmail.com> wrote:
>
> Hi,
>
> I would like to run a SW alignment, but i'm new to programming...
> Tried using several tutorials to install this Bioperl-ext package, but not
> getting that far...
> Maybe you can help?

How about using the water tool in EMBOSS? I'm sure BioPerl has
wrappers for that...

http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/water.html

Peter