March 2009 Archives by thread
Starting: Sun Mar 1 07:17:28 EST 2009
Ending: Tue Mar 31 17:38:48 EDT 2009
Messages: 256
- [Biopython-dev] ScanProsite
Michiel de Hoon
- [Biopython-dev] [Bug 2495] parse element symbols for ATOM/HETATM records (Bio.PDB.PDBParser)
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2292] Bio.PDBIO writes TER records without any required fields
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2774] New: Bio.PDBIO.save doesn't write the required END record
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2776] New: Bio.pairwise2 returns non-optimal alignment in at least some cases
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2777] New: [Solution is one line change!] Entity sorting altered by detach_child() calls
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2778] New: Efficiency improvement in function Bio.SeqUtils.GC()
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2779] New: Seq.count() docstring should note unexpected behaviour
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2678] Bio.Entrez module does not always retrieve or find DTD files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2780] New: PDB file HETATMs cannot be alternative location of a residue that is an ATOM
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2678] Bio.Entrez module does not always retrieve or find DTD files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2781] New: Bio.PDB Structure instances cannot be deepcopied
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] Fwd: [Utilities-announce] NCBI E-Utilities requirements updated
Peter
- [Biopython-dev] determining the version
Peter
- [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2551] Adding advanced __getitem__ to generic alignment, e.g. align[1:2, 5:-5]
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2767] Bio.SeqIO support for FASTQ and QUAL files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2551] Adding advanced __getitem__ to generic alignment, e.g. align[1:2, 5:-5]
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2767] Bio.SeqIO support for FASTQ and QUAL files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2783] New: Using alternative start codons in Bio.Seq translate method/function
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2381] translate and transcribe methods for the Seq object (in Bio.Seq)
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2762] GFF capability in SeqIO
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] Bio.Entrez catching more errors
Peter
- [Biopython-dev] function to map uniprot IDs with PDB IDs
Lorena Carló
- [Biopython-dev] [Bug 2788] New: Bio.Nexus.Trees newick parser crash
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2543] Bio.Nexus.Trees can't handle named ancestors
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] biopython on github
Chris Lasher
- [Biopython-dev] library to create gel image
Jose Blanca
- [Biopython-dev] Bio.ExPASy
Michiel de Hoon
- [Biopython-dev] Fw: Re: Bio.Entrez catching more errors
Michiel de Hoon
- [Biopython-dev] Preparing for Biopython 1.50 (beta)
Peter
- [Biopython-dev] [Bug 2790] New: Genepop parser creates a full representation of the file on memory
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2791] New: GenBank Scanner does not parse environmental (ENV) files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] history on github - where are the tags?
Peter
- [Biopython-dev] history on github - where are the tags?
Bartek Wilczynski
- [Biopython-dev] gitignore file for github
Peter
- [Biopython-dev] [Bug 2767] Bio.SeqIO support for FASTQ and QUAL files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] PDB Parser error
Rodrigo faccioli
- [Biopython-dev] [Bug 2767] Bio.SeqIO support for FASTQ and QUAL files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2654] Bio.Blast.NCBIStandalone does not support the output file argument
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2654] Bio.Blast.NCBIStandalone does not support the output file argument
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] Help pages in Biopython wiki
Chris Lasher
- [Biopython-dev] Test - ignore
Cymon Cox
- [Biopython-dev] [Bug 2678] Bio.Entrez module does not always retrieve or find DTD files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2678] Bio.Entrez module does not always retrieve or find DTD files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2767] Bio.SeqIO support for FASTQ and QUAL files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2770] suggestion: raise a warning if Entrez.email is not set
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2718] Bio.Graphics and output file formats (PDF, EPS, SVG, and bitmaps)
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2795] New: Add commit, rollback, close to DBServer object
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2754] Bio.PDB: Parse warnings should print to stderr, not stdout
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2754] Bio.PDB: Parse warnings should print to stderr, not stdout
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2678] Bio.Entrez module does not always retrieve or find DTD files
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2771] Bio.Entrez.read can't parse XML files from dbSNP (snp database)
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2759] Unit test for Bio.PDB.HSExposure
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] It's out!
Iddo Friedberg
- [Biopython-dev] [Bug 2759] Unit test for Bio.PDB.HSExposure
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] [Bug 2754] Bio.PDB: Parse warnings should print to stderr, not stdout
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] PDB tidy script, was: [Bug 275
Peter
- [Biopython-dev] PDB tidy script
Peter
- [Biopython-dev] SeqIO and qual: Question about reading and writing qual files
Sebastian Bassi
- [Biopython-dev] [Bug 2799] New: UnknownSeq object (e.g. for QUAL files)
bugzilla-daemon at portal.open-bio.org
- [Biopython-dev] history on github - where are the tags?
Bartek Wilczynski
- [Biopython-dev] Biopython on Twitter
Leighton Pritchard
- [Biopython-dev] [BioPython] about the SeqRecord slicing
Jose Blanca
- [Biopython-dev] Testing Biopython with NumPy 1.3
Peter
- [Biopython-dev] test_Nexus.py and NamedTemporaryFile mode
Peter
- [Biopython-dev] Multiple alignment - Clustalw etc...
Cymon Cox
- [Biopython-dev] Google Summer of Code -- phyloXML parser project
Eric Talevich
- [Biopython-dev] Python's new DVCS chosen
Peter
- [Biopython-dev] Easy Git - git for mere mortals?
Peter
- [Biopython-dev] Plan for Biopython 1.50 (beta)
Peter
Last message date:
Tue Mar 31 17:38:48 EDT 2009
Archived on: Tue Mar 31 17:38:51 EDT 2009
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