October 2005 Archives by thread

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Starting: Sat Oct 1 12:50:02 EST 2005
Ending: Mon Oct 31 17:54:13 EST 2005
Messages: 166

• [Bioperl-l] Off topic: 'Intelligent Design' in schools in US   Stefan Kirov
• [Bioperl-l] Re: entrezgene binary ASN   Hilmar Lapp
  • [Bioperl-l] Re: entrezgene binary ASN   Stefan Kirov
    • [Bioperl-l] Re: entrezgene binary ASN   Hilmar Lapp
      • [Bioperl-l] Re: entrezgene binary ASN   Michael Seewald
      • [Bioperl-l] Re: entrezgene binary ASN   Hilmar Lapp
      • [Bioperl-l] Re: entrezgene binary ASN   Stefan Kirov
      • [Bioperl-l] Re: entrezgene binary ASN   Mingyi Liu
• [Bioperl-l] get_nof_contigs returns undef   Wes Barris
  • [Bioperl-l] get_nof_contigs returns undef   Heikki Lehvaslaiho
• [Bioperl-l] BioCorba and phylogenetic trees   Rutger Vos
  • [Bioperl-l] BioCorba and phylogenetic trees   Jason Stajich
    • [Bioperl-l] BioCorba and phylogenetic trees   Rutger Vos
• [Bioperl-l] SeqFeature::add_tag_value   Mike Muratet
  • [Bioperl-l] SeqFeature::add_tag_value   Hilmar Lapp
    • [Bioperl-l] SeqFeature::add_tag_value   Mike Muratet
• [Bioperl-l] bioperl-live CVS installation   Heikki Lehvaslaiho
• [Bioperl-l] Re: [BioSQL-l] removing features from a sequence   Hilmar Lapp
  • [Bioperl-l] Re: [BioSQL-l] removing features from a sequence   Amit Indap
    • [Bioperl-l] Re: [BioSQL-l] removing features from a sequence   Hilmar Lapp
• [Bioperl-l] Fwd: [Bioperl-guts-l] How to obtain all x-linked genes from human genome?   Heikki Lehvaslaiho
  • [Bioperl-l] Fwd: [Bioperl-guts-l] How to obtain all x-linked genes from human genome?   Sean Davis
• [Bioperl-l] Connecting to EnsEMBL databases help!   Olena Morozova
  • [Bioperl-l] Connecting to EnsEMBL databases help!   Stefan Kirov
  • [Bioperl-l] Connecting to EnsEMBL databases help!   venomousanimal
• [Bioperl-l] Problem while downloading bioperl on windows 2000   radhika.narayanan at siritech.com
  • [Bioperl-l] Problem while downloading bioperl on windows 2000   Chris Fields
• [Bioperl-l] Need help for a GO request   ctemp2 at free.fr
  • [Bioperl-l] Need help for a GO request   Stefan Kirov
  • [Bioperl-l] Need help for a GO request   Brian Osborne
• [Bioperl-l] GeneKeyDB -- finding orthologues question   Olena Morozova
  • [Bioperl-l] GeneKeyDB -- finding orthologues question   Brian Osborne
• [Bioperl-l] bug   Stefan Kirov
• [Bioperl-l] Assembly error when parsing .ace files   Wes Barris
  • [Bioperl-l] Assembly error when parsing .ace files   Jason Stajich
• [Bioperl-l] Problem while downloading bioperl on windows 2000   Barry Moore
  • [Bioperl-l] Problem while downloading bioperl on windows 2000   Chris Fields
• [Bioperl-l] Fwd: Help with BPLite   Jason Stajich
• [Bioperl-l] Fwd: Help with BPLite   Barry Moore
• [Bioperl-l] Fwd: Help with BPLite   Barry Moore
• [Bioperl-l] perlcast   Jason Stajich
• [Bioperl-l] release candidate 4 (hopefully the last!), release information   Jason Stajich
  • [Bioperl-l] release candidate 4 (hopefully the last!), release information   Stefan Kirov
  • [Bioperl-l] release candidate 4 (hopefully the last!), release information   Hilmar Lapp
  • [Bioperl-l] release candidate 4 (hopefully the last!), release information   Heikki Lehvaslaiho
• [Bioperl-l] release candidate 4 (hopefully the last!), release information   Jason Stajich
• [Bioperl-l] bioperl-live make test failure   Scott Cain
• [Bioperl-l] Re: bioperl-live make test failure   Jason Stajich
• [Bioperl-l] Proposal for AI methods in Bioperl   Mauricio Herrera Cuadra
  • [Bioperl-l] Proposal for AI methods in Bioperl   Michael Seewald
  • [Bioperl-l] Proposal for AI methods in Bioperl   Hilmar Lapp
    • [Bioperl-l] Proposal for AI methods in Bioperl   Sean Davis
    • [Bioperl-l] Proposal for AI methods in Bioperl   Paulo Almeida
  • [Bioperl-l] Re: Proposal for AI methods in Bioperl   Mauricio Herrera Cuadra
• [Bioperl-l] FreeBSD ports   Mauricio Herrera Cuadra
• [Bioperl-l] strange problem about seq->alphabet   Zhe Chen
• [Bioperl-l] strange problem about seq->alphabet   Marc Logghe
• [Bioperl-l] Batch retrieval of seq from swiss-prot   Harish S
  • [Bioperl-l] Batch retrieval of seq from swiss-prot   Jason Stajich
• [Bioperl-l] IRC for Bioperl   Harish S
  • [Bioperl-l] IRC for Bioperl   Heikki Lehvaslaiho
    • [Bioperl-l] IRC for Bioperl   Allen Day
• [Bioperl-l] Please help   Angshu Kar
  • [Bioperl-l] Please help   Brian Osborne
• [Bioperl-l] Proposal for AI methods in Bioperl   Matthew Betts
• [Bioperl-l] A question about rpsblast   =?Big5?B?tqep+qXNrOy0v7S6wkU=?=
  • [Bioperl-l] A question about rpsblast   Zhang Chen
• [Bioperl-l] How to extract promoter region seq from genbank or another source?   Sam Al-Droubi
• [Bioperl-l] needs help...   Angshu Kar
• [Bioperl-l] bioperl 1.5.1 release   Jason Stajich
• [Bioperl-l] 1.5.1 info for the devs   Jason Stajich
• [Bioperl-l] Re: BioCorba and phylogenetic trees   Martin Senger
  • [Bioperl-l] Re: BioCorba and phylogenetic trees   Chervitz, Steve
• [Bioperl-l] Please help   Barry Moore
• [Bioperl-l] SimpleAlign add_seq ("%s/%d-%d",$id,$start,$end)   Albert Vilella
  • [Bioperl-l] SimpleAlign add_seq ("%s/%d-%d",$id,$start,$end)   Jason Stajich
• [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw   Angshu Kar
  • [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw   Scott Markel
• [Bioperl-l] running clustalw   Angshu Kar
• FW: [Bioperl-l] How to extract promoter region seq from genbank or another source?   Brian Osborne
  • FW: [Bioperl-l] How to extract promoter region seq from genbank or another source?   Stefan Kirov
    • [Bioperl-l] How to extract promoter region seq from genbank or another source?   Sean Davis
• FW: [Bioperl-l] Please help   Barry Moore
  • [Bioperl-l] Please help   Brian Osborne
• [Bioperl-l] Please help   Barry Moore
• [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw   Barry Moore
• [Bioperl-l] bioperl genbank output is different than web?   Sam Al-Droubi
  • [Bioperl-l] bioperl genbank output is different than web?   James Wasmuth
• [Bioperl-l] bioperl genbank output is different than web?   Barry Moore
  • [Bioperl-l] bioperl genbank output is different than web?   Jason Stajich
• [Bioperl-l] Can't find gene sequence in choromosome sequence   Sam Al-Droubi
• [Bioperl-l] question about bioperl and microarrays   pavlidis at imbb.forth.gr
• [Bioperl-l] grouping sequences by DNA-binding domains   Olena Morozova
• [Bioperl-l] Re: grouping sequences by DNA-binding domains -- elaboration   Olena Morozova
  • [Bioperl-l] Re: grouping sequences by DNA-binding domains -- elaboration   Brian Osborne
    • [Bioperl-l] Re: grouping sequences by DNA-binding domains -- elaboration   Olena Morozova
      • [Bioperl-l] Re: grouping sequences by DNA-binding domains -- elaboration   Brian Osborne
      • [Bioperl-l] Re: grouping sequences by DNA-binding domains -- elaboration   Stefan Kirov
      • [Bioperl-l] Re: grouping sequences by DNA-binding domains -- elaboration   Brian Osborne
      • [Bioperl-l] Re: grouping sequences by DNA-binding domains -- elaboration   Stefan Kirov
• [Bioperl-l] Can't find gene sequence in choromosome sequence   Barry Moore
• [Bioperl-l] FASTA 2 GenBank   Peter.Robinson at t-online.de
  • [Bioperl-l] FASTA 2 GenBank   Jason Stajich
• [Bioperl-l] HOWTO Beginners: formatdb program/indexing a database sequence file?   Sam Al-Droubi
  • [Bioperl-l] HOWTO Beginners: formatdb program/indexing a databasesequence file?   Ryan Golhar
• [Bioperl-l] HOWTO Beginners: formatdb program/indexing a databasesequence file?   Barry Moore
• [Bioperl-l] HOWTO Beginners: formatdb program/indexing a databasesequence file?   Barry Moore
  • [Bioperl-l] HOWTO Beginners: formatdb program/indexing adatabasesequence file?   Ryan Golhar
• [Bioperl-l] can i get phrap assmebly error rate?   Magic Fang
• [Bioperl-l] Alphabet guessing   Dmitri Bichko
  • [Bioperl-l] Alphabet guessing   Jason Stajich
    • [Bioperl-l] Alphabet guessing   Chervitz, Steve
• [Bioperl-l] Re: Problem with Bio::DB::DBI::Pg after upgrading to core-1.5.1 and latest cvs   Hilmar Lapp
  • [Bioperl-l] Re: Problem with Bio::DB::DBI::Pg after upgrading to core-1.5.1 and latest cvs   Daniel Lang
• [Bioperl-l] About array CGH data based on BAC clones   Alex Zhang
  • [Bioperl-l] About array CGH data based on BAC clones   Sean Davis
  • [Bioperl-l] Re: [BiO BB] About array CGH data based on BAC clones   Philippe Hupé
    • [Bioperl-l] Re: [BiO BB] About array CGH data based on BAC clones   Hilmar Lapp
• [Bioperl-l] Re: a problem with DNAStatistics   Jason Stajich
• [Bioperl-l] Re: a problem with DNAStatistics   Jason Stajich
• [Bioperl-l] Fwd: Could you help me to solve the problem about installing bioperl under Windous XP   Jason Stajich
  • [Bioperl-l] Fwd: Could you help me to solve the problem about installing bioperl under Windous XP   Scott Cain
• [Bioperl-l] looking for modules to retrieve signals and genomic positton for each probe in the probe set of Affymetrix Array   szhan at uoguelph.ca
  • [Bioperl-l] looking for modules to retrieve signals and genomic positton for each probe in the probe set of Affymetrix Array   Sean Davis
• [Bioperl-l] Fwd: Could you help me to solve the problem aboutinstalling bioperl under Windous XP   Barry Moore
• [Bioperl-l] Re: grouping sequences by DNA-binding domains --elaboration   Barry Moore
• [Bioperl-l] 1.5.1 install on top of old one?   Sam Al-Droubi
  • [Bioperl-l] 1.5.1 install on top of old one?   Brian Osborne
• [Bioperl-l] Patch to Bioperl Modules   Filipe Garrett
  • [Bioperl-l] Patch to Bioperl Modules   Jason Stajich
• [Bioperl-l] Cigar?   Brian Osborne
  • [Bioperl-l] Cigar?   Brian Osborne
• [Bioperl-l] Re: [Bioperl-guts-l] please can anyone help me..   Jason Stajich
• [Bioperl-l] Unroot a Bio::Tree   Filipe Garrett
• [Bioperl-l] Ask the Cluster Expert   Nick I
• [Bioperl-l] extracting subsequences   Amit Indap
  • [Bioperl-l] extracting subsequences   Jason Stajich
    • [Bioperl-l] extracting subsequences   Sean Davis
  • [Bioperl-l] extracting subsequences   Scott Cain
• [Bioperl-l] Setting Theoretical Database size for bl2seq   Waibhav Tembe
  • [Bioperl-l] Setting Theoretical Database size for bl2seq   khoueiry
  • [Bioperl-l] Setting Theoretical Database size for bl2seq   Ryan Golhar
• [Bioperl-l] perl memory problem   Zaigang Liu
  • [Bioperl-l] perl memory problem   Jason Stajich
  • [Bioperl-l] perl memory problem   Jérémy JUST
• [Bioperl-l] Setting Theoretical Database size for bl2seq   Joseph Bedell
• [Bioperl-l] retrieving gene model from gff database   Tobias Straub
• [Bioperl-l] suggestions for additions to Tree   Georgii Bazykin
• [Bioperl-l] perl memory problem   Barry Moore
• [Bioperl-l] FW: [Bug 1754] Bio::Location::Fuzzy.pm -> SwissProt FeatureTable locationvalue error (undef values!)   Brian Osborne
• [Bioperl-l] Re: [Bug 1754] Bio::Location::Fuzzy.pm -> SwissProt FeatureTable locationvalue error (undef values!)   Brian Osborne
• [Bioperl-l] Fwd: Please take the Gene Ontology survey   Boris Steipe
• [Bioperl-l] Bio::SeqFeature::Generic tag trouble.   Govind Chandra
  • [Bioperl-l] Bio::SeqFeature::Generic tag trouble.   Jason Stajich
• [Bioperl-l] install binary bioperl-1.4 on windows   Anders Stegmann
• [Bioperl-l] RemoteBlast problem   Thomas J Keller
  • [Bioperl-l] RemoteBlast problem   Jason Stajich
    • [Bioperl-l] RemoteBlast problem   Thomas J Keller
  • [Bioperl-l] RemoteBlast problem   Scott Markel
• [Bioperl-l] RemoteBlast problem   Marc Logghe
• [Bioperl-l] Genbank parser   Bingshan Li
• [Bioperl-l] PAML wrappers   Albert Vilella
• [Bioperl-l] noob Bio::DB::Biblio problem   Chihiro Yamada
• [Bioperl-l] Re: Bioperl-l Digest, Vol 30, Issue 11   James D. White
• [Bioperl-l] perl memory problem   James D. White
• [Bioperl-l] Bio::Align::DNAStatistics ka/ks calculation bugs?   Bingshan Li

Last message date: Mon Oct 31 17:54:13 EST 2005
Archived on: Thu Nov 3 14:25:30 EST 2005

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