[Bioperl-l] Re: grouping sequences by DNA-binding domains -- elaboration

[Olena Morozova]

Hi agian,

I just figured out how to obtain a list of conserved domains for a
given sequence using the SeqHound.pm module available at
http://www.blueprint.org/seqhound/apifunctslist.html

Now I have a list of conserved domains for a given sequence and I need
to extract information as to what these domains are and which ones are
DNA-binding. Any help on this will be greatly appreciated

Thanks again,
Olena


On 10/16/05, Olena Morozova <olenka.m at gmail.com> wrote:
> I have a list of transcription factor sequences, and I need to group
> them according to the DNA-binding domains based on the classification
> by TRANSFAC or any other database. Basically, I just need to extract
> the DNA-binding domain information for a particular TF from a database
> like TRANSFAC (I don't know what other databases would have this
> information, but any will do) Anyone has any idea how to do this?
> Thank you very much for your help and time
>
> Olena
>