September 2008 Archives by thread

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Starting: Tue Sep 2 09:06:51 EDT 2008
Ending: Tue Sep 30 20:24:18 EDT 2008
Messages: 174

• [Biopython-dev] [Bug 2543] Bio.Nexus.Trees can't handle named ancestors   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2543] Bio.Nexus.Trees can't handle named ancestors   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2543] Bio.Nexus.Trees can't handle named ancestors   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Preparing for Biopython 1.48   Peter
  • [Biopython-dev] Preparing for Biopython 1.48   Tiago Antão
    • [Biopython-dev] Preparing for Biopython 1.48   Jared Flatow
• [Biopython-dev] Preparing for Biopython 1.48   Peter
  • [Biopython-dev] Preparing for Biopython 1.48   Tiago Antão
    • [Biopython-dev] Preparing for Biopython 1.48   Peter
      • [Biopython-dev] Preparing for Biopython 1.48   Tiago Antão
• [Biopython-dev] [Bug 2578] New: The GenBank SeqRecord parser does not record module type or if circular   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2578] The GenBank SeqRecord parser does not record module type or if circular   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2578] The GenBank SeqRecord parser does not record molecule type or if circular   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] CVS freeze for Biopython 1.48   Peter
  • [Biopython-dev] CVS freeze for Biopython 1.48   Peter
• [Biopython-dev] Nexus issue on Windows with Python 2.3   Peter
  • [Biopython-dev] Nexus issue on Windows with Python 2.3   Peter
    • [Biopython-dev] Nexus issue on Windows with Python 2.3   Frank Kauff
• [Biopython-dev] New line issues in the source zip or tarballs   Peter
  • [Biopython-dev] New line issues in the source zip or tarballs   Tiago Antão
    • [Biopython-dev] New line issues in the source zip or tarballs   Peter
• [Biopython-dev] test_SVDSuperimposer.py   Peter Cock
  • [Biopython-dev] test_SVDSuperimposer.py   Michiel de Hoon
• [Biopython-dev] test_SVDSuperimposer.py   Peter Cock
  • [Biopython-dev] test_SVDSuperimposer.py   Michiel de Hoon
    • [Biopython-dev] test_SVDSuperimposer.py   Peter Cock
      • [Biopython-dev] test_SVDSuperimposer.py   Michiel de Hoon
• [Biopython-dev] BioPythonGUI: Graphical User Interface for BioPython   Wubin Qu
• [Biopython-dev] [BioPython] BioPythonGUI: Graphical User Interface for BioPython   Peter Cock
  • [Biopython-dev] [BioPython] BioPythonGUI: Graphical User Interface for BioPython   Wubin Qu
• [Biopython-dev] Biopython 1.48 released   Peter
• [Biopython-dev] BioPythonGUI: Graphical User Interface for BioPython   Marshall Hampton
  • [Biopython-dev] BioPythonGUI: Graphical User Interface for BioPython   Wubin Qu
• [Biopython-dev] BioPythonGUI: Graphical User Interface for BioPython   Marshall Hampton
• [Biopython-dev] [Bug 2583] New: small bug in NCBIXML.py   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2583] small bug in NCBIXML.py   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2583] small bug in NCBIXML.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] NumPy conversion roadmap   Michiel de Hoon
• [Biopython-dev] Bio.Affy   Michiel de Hoon
• [Biopython-dev] Bio.KDTree   Michiel de Hoon
• [Biopython-dev] NumPy conversion roadmap   Brad Chapman
  • [Biopython-dev] NumPy conversion roadmap   Michiel de Hoon
    • [Biopython-dev] NumPy conversion roadmap   Brad Chapman
• [Biopython-dev] [Bug 2585] New: Error in Bio.SeqUtils.apply_on_multi_fasta   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2585] Error in Bio.SeqUtils.apply_on_multi_fasta   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2585] Error in Bio.SeqUtils.apply_on_multi_fasta   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2585] Error in Bio.SeqUtils.apply_on_multi_fasta   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2585] Error in Bio.SeqUtils.apply_on_multi_fasta   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2586] New: New version of MeltingTemp.py   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2586] New version of MeltingTemp.py   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2586] New version of MeltingTemp.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] NumPy conversion / Bio.KDTree / Bio.Cluster.   Michiel de Hoon
  • [Biopython-dev] NumPy conversion / Bio.KDTree / Bio.Cluster.   Brad Chapman
    • [Biopython-dev] NumPy conversion / Bio.KDTree / Bio.Cluster.   Michiel de Hoon
  • [Biopython-dev] NumPy conversion / Bio.KDTree / Bio.Cluster.   Michiel de Hoon
• [Biopython-dev] Numpy conversion   Michiel de Hoon
  • [Biopython-dev] Numpy conversion   Peter
    • [Biopython-dev] Numpy conversion   Michiel de Hoon
      • [Biopython-dev] Numpy conversion   Michiel de Hoon
• [Biopython-dev] Cleaning up Bio.SeqUtils   Peter
  • [Biopython-dev] Cleaning up Bio.SeqUtils   Thomas Sicheritz-Ponten
    • [Biopython-dev] Cleaning up Bio.SeqUtils   Peter
      • [Biopython-dev] Cleaning up Bio.SeqUtils   Thomas Sicheritz-Ponten
      • [Biopython-dev] Cleaning up Bio.SeqUtils   Peter
      • [Biopython-dev] Cleaning up Bio.SeqUtils   Thomas Sicheritz-Ponten
      • [Biopython-dev] Cleaning up Bio.SeqUtils   Peter
      • [Biopython-dev] Cleaning up Bio.SeqUtils   Peter
• [Biopython-dev] Author of "restriction tutorial"?   Sebastian Bassi
  • [Biopython-dev] Author of "restriction tutorial"?   Peter
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Modules to be removed from Biopython   Peter
  • [Biopython-dev] Modules to be removed from Biopython   Peter
    • [Biopython-dev] Modules to be removed from Biopython   Peter
      • [Biopython-dev] Modules to be removed from Biopython   Michiel de Hoon
      • [Biopython-dev] Modules to be removed from Biopython   Peter
      • [Biopython-dev] Modules to be removed from Biopython   Michiel de Hoon
      • [Biopython-dev] Modules to be removed from Biopython   Peter
      • [Biopython-dev] Modules to be removed from Biopython   Peter
      • [Biopython-dev] Modules to be removed from Biopython   Michiel de Hoon
      • [Biopython-dev] Modules to be removed from Biopython   Peter
      • [Biopython-dev] Modules to be removed from Biopython   Brad Chapman
      • [Biopython-dev] Modules to be removed from Biopython   Leighton Pritchard
• [Biopython-dev] test_MarkovModel.py and Numeric/numpy work?   Peter
  • [Biopython-dev] test_MarkovModel.py and Numeric/numpy work?   Michiel de Hoon
    • [Biopython-dev] test_MarkovModel.py and Numeric/numpy work?   Peter
• [Biopython-dev] [Bug 2588] New: tutorial blast section uses undefined variables   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2588] tutorial blast section uses undefined variables   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Numeric/numpy - Bio/Affy/CelFile.py   Peter Cock
  • [Biopython-dev] Numeric/numpy - Bio/Affy/CelFile.py   Michiel de Hoon
    • [Biopython-dev] Numeric/numpy - Bio/Affy/CelFile.py   Peter Cock
      • [Biopython-dev] Numeric/numpy - Bio/Affy/CelFile.py   Michiel de Hoon
• [Biopython-dev] [Bug 2589] New: Errors in running tests in 1.48   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2589] Errors in running tests in 1.48   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2589] Errors in running tests in 1.48   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2589] Errors in running tests in 1.48   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2589] Errors in running tests in 1.48   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2251] [PATCH] NumPy support for BioPython   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Numeric/numpy   Peter Cock
  • [Biopython-dev] Numeric/numpy   Brad Chapman
  • [Biopython-dev] Numeric/numpy   Michiel de Hoon
    • [Biopython-dev] Numeric/numpy   Peter
• [Biopython-dev] [Bug 2591] New: GenBank files misparsed for long organism names   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2591] GenBank files misparsed for long organism names   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] BOSC 2008 presentation   Peter
• [Biopython-dev] [Bug 2592] New: numpy migration for Bio.PDB.Vector   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] about the SeqRecord and SeqFeature classes   Jose Blanca
  • [Biopython-dev] about the SeqRecord and SeqFeature classes   Peter
    • [Biopython-dev] about the SeqRecord and SeqFeature classes   Jose Blanca
      • [Biopython-dev] about the SeqRecord and SeqFeature classes   Peter
      • [Biopython-dev] about the SeqRecord and SeqFeature classes   Jose Blanca
      • [Biopython-dev] about the SeqRecord and SeqFeature classes   Peter
      • [Biopython-dev] about the SeqRecord and SeqFeature classes   Jose Blanca
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Online access, Bio.PubMed & Bio.GenBank vs Bio.Entrez   Peter
• [Biopython-dev] test_ParserSupport.py   Peter
  • [Biopython-dev] test_ParserSupport.py   Michiel de Hoon
    • [Biopython-dev] test_ParserSupport.py   Peter
• [Biopython-dev] [Bug 2489] KDTree NN search without specifying radius   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Versions of numpy/Numeric   Peter
  • [Biopython-dev] Versions of numpy/Numeric   Bruce Southey
  • [Biopython-dev] Versions of numpy/Numeric   Bruce Southey
    • [Biopython-dev] Versions of numpy/Numeric   Peter
      • [Biopython-dev] Versions of numpy/Numeric   Bruce Southey
      • [Biopython-dev] Versions of numpy/Numeric   Peter
      • [Biopython-dev] Versions of numpy/Numeric   Bruce Southey
• [Biopython-dev] determining the version   Peter
  • [Biopython-dev] determining the version   Michiel de Hoon
    • [Biopython-dev] determining the version   Peter
      • [Biopython-dev] determining the version   Bruce Southey
• [Biopython-dev] [Bug 2251] [PATCH] NumPy support for BioPython   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Sequences and simple plots   Peter
  • [Biopython-dev] Sequences and simple plots   Peter
  • [Biopython-dev] Sequences and simple plots   Jared Flatow
    • [Biopython-dev] Sequences and simple plots   Peter
      • [Biopython-dev] Sequences and simple plots   Peter
      • [Biopython-dev] Sequences and simple plots   Jared Flatow
      • [Biopython-dev] Sequences and simple plots   Peter
      • [Biopython-dev] Sequences and simple plots   Jared Flatow
      • [Biopython-dev] Sequences and simple plots   Peter
      • [Biopython-dev] Sequences and simple plots   Jared Flatow
      • [Biopython-dev] Sequences and simple plots   Peter
• [Biopython-dev] [Bug 2425] Fasta ID parsing error   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2425] Fasta ID parsing error   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2507] Adding __getitem__ to SeqRecord for element access and slicing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2596] New: Add string like strip, rstrip and lstrip methods to the Seq object   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2596] Add string like split, strip, rstrip and lstrip methods to the Seq object   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2596] Add string like split, strip, rstrip and lstrip methods to the Seq object   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2351] Make Seq more like a string, even subclass string?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2532] Using IUPAC alphabets in mixed case Seq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2597] New: Enforce alphabet letters in Seq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2532] Using IUPAC alphabets in mixed case Seq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2532] Using IUPAC alphabets in mixed case Seq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Numeric / NumPy conversion   Michiel de Hoon
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2600] New: enhance Seq and SeqRecord to new style classes   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2600] enhance Seq and SeqRecord to new style classes   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2351] Make Seq more like a string, even subclass string?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2601] New: Seq find() method: proposal   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2601] Seq find() method: proposal   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2601] Seq find() method: proposal   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2601] Seq find() method: proposal   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2601] Seq find() method: proposal   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2601] Seq find() method: proposal   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2475] BioSQL.Loader should reuse existing taxon entries in lineage   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2551] Adding advanced __getitem__ to generic alignment, e.g. align[1:2, 5:-5]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2551] Adding advanced __getitem__ to generic alignment, e.g. align[1:2, 5:-5]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2475] BioSQL.Loader should reuse existing taxon entries in lineage   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2480] Local BLAST fails: Spaces in Windows file-path values   bugzilla-daemon at portal.open-bio.org

Last message date: Tue Sep 30 20:24:18 EDT 2008
Archived on: Tue Sep 30 20:24:22 EDT 2008

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