September 2009 Archives by thread

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Starting: Tue Sep 1 08:20:25 EDT 2009
Ending: Wed Sep 30 18:40:33 EDT 2009
Messages: 277

• [Bioperl-l] help parsing msf file or clustalW file reports   Paola Bisignano
  • [Bioperl-l] help parsing msf file or clustalW file reports   Jason Stajich
• [Bioperl-l] GMOD Chado perl modules moving to the Bio namespace   Scott Cain
  • [Bioperl-l] GMOD Chado perl modules moving to the Bio namespace   Scott Cain
• [Bioperl-l] covert CDS coordinates with Gene coordinates   jsun529
• [Bioperl-l] Next-Gen and the next point release - updates   Peter
  • [Bioperl-l] Next-Gen and the next point release - updates   Chris Fields
• [Bioperl-l] remove overlapped sequences from Blastn results   Marcelo Iwata
  • [Bioperl-l] remove overlapped sequences from Blastn results   Chris Fields
• [Bioperl-l] bioperl invades emacs   Mark A. Jensen
  • [Bioperl-l] bioperl invades emacs   Robert Buels
  • [Bioperl-l] bioperl invades emacs   Chris Fields
  • [Bioperl-l] bioperl invades emacs   Smithies, Russell
    • [Bioperl-l] bioperl invades emacs   Mark A. Jensen
  • [Bioperl-l] bioperl invades emacs   Hilmar Lapp
  • [Bioperl-l] bioperl invades emacs   Mark A. Jensen
    • [Bioperl-l] bioperl invades emacs   Emmanuel Quevillon
  • [Bioperl-l] bioperl invades emacs   Mark A. Jensen
• [Bioperl-l] bioperl invades emacs   Mark A. Jensen
• [Bioperl-l] remove overlapped sequences from Blastn results   Chris Fields
• [Bioperl-l] bioperl invades emacs -- bug report?   Pablo Marin-Garcia
  • [Bioperl-l] bioperl invades emacs -- bug report?   Mark A. Jensen
  • [Bioperl-l] bioperl invades emacs -- bug report?   Mark A. Jensen
    • [Bioperl-l] bioperl invades emacs -- bug report?   Pablo Marin-Garcia
      • [Bioperl-l] bioperl invades emacs -- bug report?   Mark A. Jensen
• [Bioperl-l] bioperl invades emacs -- bug report?   Mark A. Jensen
• [Bioperl-l] need help urgently   Neeti Somaiya
• [Bioperl-l] need help urgently   Neeti Somaiya
  • [Bioperl-l] need help urgently   Neeti Somaiya
    • [Bioperl-l] need help urgently   Emanuele Osimo
      • [Bioperl-l] need help urgently   Neeti Somaiya
      • [Bioperl-l] need help urgently   Chris Fields
      • [Bioperl-l] need help urgently   Smithies, Russell
      • [Bioperl-l] need help urgently   Robert Bradbury
• [Bioperl-l] problem parsing msf file   Paola Bisignano
• [Bioperl-l] problem parsing msf....:second part...I cannot solve sorry sorry   Paola Bisignano
• [Bioperl-l] need help urgently   Neeti Somaiya
  • [Bioperl-l] need help urgently   Chris Fields
    • [Bioperl-l] need help urgently   Neeti Somaiya
      • [Bioperl-l] need help urgently   Eugene Bolotin
      • [Bioperl-l] need help urgently   Chris Fields
      • [Bioperl-l] need help urgently   Neeti Somaiya
• [Bioperl-l] Fwd: help parsing msf file or clustalW file reports   Jason Stajich
• [Bioperl-l] bio:graphics   Mgavi Brathwaite
• [Bioperl-l] subsection of genbank file   Liam Elbourne
  • [Bioperl-l] subsection of genbank file   Roy Chaudhuri
    • [Bioperl-l] subsection of genbank file   Liam Elbourne
      • [Bioperl-l] subsection of genbank file   Roy Chaudhuri
      • [Bioperl-l] subsection of genbank file   Roy Chaudhuri
      • [Bioperl-l] subsection of genbank file   Chris Fields
• [Bioperl-l] Protein Sequence QSARs   Brett Bowman
  • [Bioperl-l] Protein Sequence QSARs   Mark A. Jensen
• [Bioperl-l] need help urgently   Neeti Somaiya
  • [Bioperl-l] need help urgently   Smithies, Russell
    • [Bioperl-l] need help urgently   Neeti Somaiya
      • [Bioperl-l] need help urgently   Smithies, Russell
      • [Bioperl-l] need help urgently   Chris Fields
      • [Bioperl-l] need help urgently   Neeti Somaiya
      • [Bioperl-l] need help urgently   Neeti Somaiya
• [Bioperl-l] Prepping for 1.6.1 (finally!)   Chris Fields
  • [Bioperl-l] Prepping for 1.6.1 (finally!)   Mark A. Jensen
  • [Bioperl-l] Prepping for 1.6.1 (finally!)   Lincoln Stein
• [Bioperl-l] Significant blocker for 1.6.1 : Nexml   Chris Fields
  • [Bioperl-l] Significant blocker for 1.6.1 : Nexml   Mark A. Jensen
  • [Bioperl-l] Significant blocker for 1.6.1 : Nexml   Hilmar Lapp
    • [Bioperl-l] Significant blocker for 1.6.1 : Nexml   Chris Fields
      • [Bioperl-l] Significant blocker for 1.6.1 : Nexml   Mark A. Jensen
      • [Bioperl-l] Significant blocker for 1.6.1 : Nexml   Chris Fields
      • [Bioperl-l] Significant blocker for 1.6.1 : Nexml   Chris Fields
• [Bioperl-l] problem parsing pdb   Paola Bisignano
  • [Bioperl-l] problem parsing pdb   Mark A. Jensen
    • [Bioperl-l] problem parsing pdb   Brian Osborne
  • [Bioperl-l] problem parsing pdb   Mark A. Jensen
• [Bioperl-l] Bio::Tools::RepeatMasker update?   shaohua.fan
  • [Bioperl-l] Bio::Tools::RepeatMasker update?   Chris Fields
• [Bioperl-l] Bio::DB::Fasta + Bio::SeqIO   Jason Stajich
  • [Bioperl-l] Bio::DB::Fasta + Bio::SeqIO   Chris Fields
• [Bioperl-l] Bio::Search::HSP::FastaHSP -> get_aln -> Bio::Locatable end is float   Alexie Papanicolaou
  • [Bioperl-l] Bio::Search::HSP::FastaHSP -> get_aln -> Bio::Locatable end is float   Mark A. Jensen
• [Bioperl-l] CVS to SVN Conversion, 2009/09/15   Dave Clements, GMOD Help Desk
• [Bioperl-l] tree splice remove nodes   Janet Young
  • [Bioperl-l] tree splice remove nodes   Mark A. Jensen
    • [Bioperl-l] tree splice remove nodes   Chris Fields
    • [Bioperl-l] tree splice remove nodes   Sendu Bala
      • [Bioperl-l] tree splice remove nodes   Mark A. Jensen
• [Bioperl-l] Servers   adlai burman
  • [Bioperl-l] Servers   Mark A. Jensen
• [Bioperl-l] Bio::DB::GenBank question (acc vs. version)   George Hartzell
  • [Bioperl-l] Bio::DB::GenBank question (acc vs. version)   bill at genenformics.com
    • [Bioperl-l] Bio::DB::GenBank question (acc vs. version)   Chris Fields
      • [Bioperl-l] Bio::DB::GenBank question (acc vs. version)   bill at genenformics.com
      • [Bioperl-l] Bio::DB::GenBank question (acc vs. version)   Chris Fields
• [Bioperl-l] Emacs bioperl-mode improved release   Mark A. Jensen
  • [Bioperl-l] Emacs bioperl-mode improved release   Mark A. Jensen
• [Bioperl-l] Beginner Script Error   Cavin Ward-Caviness
  • [Bioperl-l] Beginner Script Error   Robert Bradbury
• [Bioperl-l] Bio/Align/DNAStatistics.html print $jcmatrix->print_matrix;   Jose .
  • [Bioperl-l] Bio/Align/DNAStatistics.html print$jcmatrix->print_matrix;   Mark A. Jensen
    • [Bioperl-l] Bio/Align/DNAStatistics.html print$jcmatrix->print_matrix;   Jason Stajich
      • [Bioperl-l] dnastatistics   Liam Elbourne
      • [Bioperl-l] dnastatistics   Mark A. Jensen
      • [Bioperl-l] dnastatistics   Jason Stajich
      • [Bioperl-l] dnastatistics   Jose .
• [Bioperl-l] Genome scanning questions/strategies   Robert Bradbury
  • [Bioperl-l] Genome scanning questions/strategies   Chris Fields
• [Bioperl-l] problem with a script   "Joonas Jämsen"
  • [Bioperl-l] problem with a script   Robert Buels
  • [Bioperl-l] problem with a script   Kevin Brown
  • [Bioperl-l] problem with a script   Mark A. Jensen
• [Bioperl-l] problem with a script   Robert Buels
• [Bioperl-l] problem with a script   Robert Buels
• [Bioperl-l] About FASTQ parser   Abhishek Pratap
  • [Bioperl-l] About FASTQ parser   Chris Fields
    • [Bioperl-l] About FASTQ parser   Abhishek Pratap
    • [Bioperl-l] About FASTQ parser   Abhishek Pratap
      • [Bioperl-l] About FASTQ parser   Chris Fields
• [Bioperl-l] Allowing One error in Sequence matching   Abhishek Pratap
  • [Bioperl-l] Allowing One error in Sequence matching   Mark A. Jensen
  • [Bioperl-l] Allowing One error in Sequence matching   Smithies, Russell
    • [Bioperl-l] Allowing One error in Sequence matching   Abhishek Pratap
      • [Bioperl-l] Allowing One error in Sequence matching   Smithies, Russell
      • [Bioperl-l] Allowing One error in Sequence matching   Abhishek Pratap
• [Bioperl-l] Allowing One error in Sequence matching   Mark A. Jensen
• [Bioperl-l] Question concerning IUPAC.pm   Aaron Mackey
• [Bioperl-l] BioPerl 1.6.0 alpha 1 released   Chris Fields
• [Bioperl-l] Size of BioPerl distribution   Chris Fields
  • [Bioperl-l] Size of BioPerl distribution   Robert Buels
    • [Bioperl-l] Size of BioPerl distribution   Hilmar Lapp
      • [Bioperl-l] Size of BioPerl distribution   Chris Fields
      • [Bioperl-l] Size of BioPerl distribution   Robert Buels
      • [Bioperl-l] Size of BioPerl distribution   George Hartzell
      • [Bioperl-l] Size of BioPerl distribution   Mark A. Jensen
  • [Bioperl-l] Size of BioPerl distribution   Mark A. Jensen
    • [Bioperl-l] Size of BioPerl distribution   Chris Fields
• [Bioperl-l] Genome Scanning Question   Michael UNO
  • [Bioperl-l] Genome Scanning Question   Sean Davis
  • [Bioperl-l] Genome Scanning Question   Andreas Kähäri
• [Bioperl-l] Size of BioPerl distribution   Chris Fields
• [Bioperl-l] test failures in main trunk   Scott Cain
  • [Bioperl-l] test failures in main trunk   Chris Fields
    • [Bioperl-l] test failures in main trunk   Mark A. Jensen
      • [Bioperl-l] test failures in main trunk   Bruno Vecchi
• [Bioperl-l] construct chromosome sequences from bac sequences   Dan Bolser
• [Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl   Dan Bolser
  • [Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl   Chris Fields
    • [Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl   Abhishek Pratap
    • [Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl   Dan Bolser
      • [Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl   Chris Fields
      • [Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl   Florent Angly
      • [Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl   Dan Bolser
      • [Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl   Chris Fields
• [Bioperl-l] Getting read position information from an ACE file?   Dan Bolser
  • [Bioperl-l] Getting read position information from an ACE file?   Mark A. Jensen
    • [Bioperl-l] Getting read position information from an ACE file?   Dan Bolser
      • [Bioperl-l] Getting read position information from an ACE file?   Phillip San Miguel
    • [Bioperl-l] Getting read position information from an ACE file?   Chris Fields
• [Bioperl-l] Problems with Bioperl-run pkg   anupam sinha
  • [Bioperl-l] Problems with Bioperl-run pkg   anupam sinha
• [Bioperl-l] Getting all annotations   Emanuele Osimo
  • [Bioperl-l] Getting all annotations   Dan Bolser
• [Bioperl-l] a Main Page proposal   Mark A. Jensen
  • [Bioperl-l] a Main Page proposal   Sendu Bala
    • [Bioperl-l] a Main Page proposal   Robert Buels
      • [Bioperl-l] a Main Page proposal   Peter
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
      • [Bioperl-l] a Main Page proposal   Peter
      • [Bioperl-l] a Main Page proposal   Chris Fields
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
      • [Bioperl-l] a Main Page proposal   Peter
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
      • [Bioperl-l] a Main Page proposal   Jason Stajich
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
  • [Bioperl-l] a Main Page proposal   Emanuele Osimo
  • [Bioperl-l] a Main Page proposal   Hilmar Lapp
  • [Bioperl-l] a Main Page proposal   Brian Osborne
  • [Bioperl-l] a Main Page proposal   Mark A. Jensen
    • [Bioperl-l] a Main Page proposal   Dave Messina
      • [Bioperl-l] a Main Page proposal   Chris Fields
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
      • [Bioperl-l] a Main Page proposal   Brian Osborne
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
      • [Bioperl-l] a Main Page proposal   Brian Osborne
      • [Bioperl-l] a Main Page proposal   Chris Fields
• [Bioperl-l] a Main Page proposal   Smithies, Russell
  • [Bioperl-l] a Main Page proposal   Chris Fields
• [Bioperl-l] New to Bio::Tools::Run::RemoteBlast   armendarez77 at hotmail.com
  • [Bioperl-l] New to Bio::Tools::Run::RemoteBlast   Smithies, Russell
    • [Bioperl-l] New to Bio::Tools::Run::RemoteBlast   bill at genenformics.com
      • [Bioperl-l] New to Bio::Tools::Run::RemoteBlast   Smithies, Russell
      • [Bioperl-l] New to Bio::Tools::Run::RemoteBlast   Smithies, Russell
• [Bioperl-l] BioPerl 1.6.0 alpha 2 released   Chris Fields
  • [Bioperl-l] BioPerl 1.6.0 alpha 2 released   Chris Fields
• [Bioperl-l] a Main Page proposal   Jonathan Cline
  • [Bioperl-l] a Main Page proposal   Chris Fields
    • [Bioperl-l] a Main Page proposal   Dave Clements
      • [Bioperl-l] a Main Page proposal   Dave Messina
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
      • [Bioperl-l] a Main Page proposal   Peter
      • [Bioperl-l] a Main Page proposal   Chris Fields
      • [Bioperl-l] a Main Page proposal   Dave Messina
      • [Bioperl-l] a Main Page proposal   Jason Stajich
      • [Bioperl-l] a Main Page proposal   Emanuele Osimo
      • [Bioperl-l] a Main Page proposal   Hilmar Lapp
      • [Bioperl-l] a Main Page proposal   Peter
      • [Bioperl-l] a Main Page proposal   Mark A. Jensen
• [Bioperl-l] Converting between allowed SearchIO formats?   Dan Bolser
  • [Bioperl-l] Converting between allowed SearchIO formats?   Chris Fields
    • [Bioperl-l] Converting between allowed SearchIO formats?   Jason Stajich
      • [Bioperl-l] Converting between allowed SearchIO formats?   Dan Bolser
      • [Bioperl-l] Converting between allowed SearchIO formats?   Mark A. Jensen
• [Bioperl-l] Stockholm to fasta   shalabh sharma
  • [Bioperl-l] Stockholm to fasta   Chris Fields
    • [Bioperl-l] Stockholm to fasta   shalabh sharma
• [Bioperl-l] Problems installing latest stable bioperl-db (1.6)   Anthony Pemberton
  • [Bioperl-l] Problems installing latest stable bioperl-db (1.6)   Mark A. Jensen
    • [Bioperl-l] Problems installing latest stable bioperl-db (1.6)   Chris Fields
      • [Bioperl-l] Problems installing latest stable bioperl-db (1.6)   Anthony Pemberton
      • [Bioperl-l] Problems installing latest stable bioperl-db (1.6)   Chris Fields
• [Bioperl-l] BioPerl 1.6.0 alpha 3 released   Chris Fields
  • [Bioperl-l] BioPerl 1.6.0 alpha 3 released   Kristine Briedis
• [Bioperl-l] Fw: problem parsing msf file   Mark A. Jensen
• [Bioperl-l] Newbie: Format GenBank   adlai burman
  • [Bioperl-l] Newbie: Format GenBank   Roy Chaudhuri
  • [Bioperl-l] Newbie: Format GenBank   Chris Fields
• [Bioperl-l] Bio::Matrix::IO   Jose .
  • [Bioperl-l] Bio::Matrix::IO   Mark A. Jensen
• [Bioperl-l] BioPerl 1.6.0 alpha 3 released   Chris Fields
  • [Bioperl-l] BioPerl 1.6.0 alpha 3 released   Kristine Briedis
    • [Bioperl-l] BioPerl 1.6.0 alpha 3 released   Chris Fields
• [Bioperl-l] BioPerl.pm and 1.6.1   Chris Fields
• [Bioperl-l] DB_File dependency and ActiveState 5.10   Mark A. Jensen
  • [Bioperl-l] DB_File dependency and ActiveState 5.10   Robert Buels
  • [Bioperl-l] DB_File dependency and ActiveState 5.10   Chris Fields
    • [Bioperl-l] DB_File dependency and ActiveState 5.10   Mark A. Jensen
• [Bioperl-l] Bio::SeqIO::scf tests failing on WinXP?   Chris Fields
  • [Bioperl-l] Bio::SeqIO::scf tests failing on WinXP?   Mark A. Jensen
• [Bioperl-l] a Main Page proposal   Jason Stajich
• [Bioperl-l] LIMS::Controller and LIMS::Web   Jonathan Cline
• [Bioperl-l] a Main Page proposal   Mark A. Jensen
• [Bioperl-l] BioPerl 1.6.0 alpha 4 released   Chris Fields
• [Bioperl-l] setting a strand in Bio::Graphics   Emanuele Osimo
  • [Bioperl-l] setting a strand in Bio::Graphics   Mark A. Jensen
• [Bioperl-l] BioPerl 1.6.0 alpha 5 released   Chris Fields
• [Bioperl-l] Long /labels are wrapped, but can't be read   Adam Sjøgren
  • [Bioperl-l] Long /labels are wrapped, but can't be read   Chris Fields
    • [Bioperl-l] Long /labels are wrapped, but can't be read   Adam Sjøgren
• [Bioperl-l] parsing msf file   Paola Bisignano
  • [Bioperl-l] parsing msf file   Mark A. Jensen
• [Bioperl-l] parsing msf file (sorry last question about it)   Paola Bisignano
  • [Bioperl-l] parsing msf file (sorry last question about it)   Dave Messina
• [Bioperl-l] parsing msf file (sorry last question about it)   Dave Messina
• [Bioperl-l] setting a strand in Bio::Graphics   Mark A. Jensen
• [Bioperl-l] BioPerl object deep copy   Paolo Pavan
  • [Bioperl-l] BioPerl object deep copy   Spiros Denaxas
  • [Bioperl-l] BioPerl object deep copy   Mark A. Jensen
    • [Bioperl-l] BioPerl object deep copy   Chris Fields
• [Bioperl-l] BioPerl 1.6.0 alpha 6 released (?!?)   Chris Fields
• [Bioperl-l] Policy on tests   Chris Fields
• [Bioperl-l] a Main Page proposal   Martin Senger
  • [Bioperl-l] a Main Page proposal   Jason Stajich
• [Bioperl-l] BioPerl 1.6.1 released   Chris Fields
  • [Bioperl-l] BioPerl 1.6.1 released   Robert Buels
  • [Bioperl-l] BioPerl 1.6.1 released   Scott Cain
  • [Bioperl-l] BioPerl 1.6.1 released   Sendu Bala
  • [Bioperl-l] BioPerl 1.6.1 released   Hilmar Lapp
    • [Bioperl-l] BioPerl 1.6.1 released   Chris Fields
      • [Bioperl-l] Re: BioPerl 1.6.1 released   Siddhartha Basu
  • [Bioperl-l] BioPerl 1.6.1 released   Mark A. Jensen
• [Bioperl-l] Naming of BioPerl-run/db/network   Chris Fields
  • [Bioperl-l] Naming of BioPerl-run/db/network   Hilmar Lapp
• [Bioperl-l] assistance with bioperl   Antonina Iagovitina
  • [Bioperl-l] assistance with bioperl   Mark A. Jensen
• [Bioperl-l] Nexus symbols   Luis M Rodriguez-R
• [Bioperl-l] Nexus symbols   Luis M Rodriguez-R
  • [Bioperl-l] Nexus symbols   Jason Stajich

Last message date: Wed Sep 30 18:40:33 EDT 2009
Archived on: Fri Oct 2 09:32:59 EDT 2009

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