April 2008 Archives by thread

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Starting: Tue Apr 1 08:31:49 EDT 2008
Ending: Wed Apr 30 14:29:28 EDT 2008
Messages: 167

• [Bioperl-l] Indexing large databases / BioSQL   Bánk Beszteri
  • [Bioperl-l] Indexing large databases / BioSQL   Hilmar Lapp
    • [Bioperl-l] Indexing large databases / BioSQL   Bánk Beszteri
      • [Bioperl-l] Indexing large databases / BioSQL   Chris Fields
      • [Bioperl-l] Indexing large databases / BioSQL   Sendu Bala
• [Bioperl-l] quick update on bioperl nightly builds   Chris Fields
  • [Bioperl-l] quick update on bioperl nightly builds   Scott Cain
    • [Bioperl-l] quick update on bioperl nightly builds   Chris Fields
      • [Bioperl-l] [Gmod-gbrowse] quick update on bioperl nightly builds   Scott Cain
      • [Bioperl-l] [Gmod-gbrowse] quick update on bioperl nightly builds   Chris Fields
      • [Bioperl-l] [Gmod-gbrowse] quick update on bioperl nightly builds   Chris Fields
• [Bioperl-l] How to make a network graphic using my genes in pathways?   Jinyan Huang
  • [Bioperl-l] How to make a network graphic using my genes in pathways?   Sean Davis
    • [Bioperl-l] How to make a network graphic using my genes in pathways?   Dave Messina
    • [Bioperl-l] GenBank entries creation dates   Miguel Pignatelli
      • [Bioperl-l] GenBank entries creation dates   Heikki Lehvaslaiho
      • [Bioperl-l] GenBank entries creation dates   Chris Fields
      • [Bioperl-l] GenBank entries creation dates   Miguel Pignatelli
      • [Bioperl-l] GenBank entries creation dates   Chris Fields
      • [Bioperl-l] GenBank entries creation dates   Martin MOKREJŠ
      • [Bioperl-l] GenBank entries creation dates   Cui, Wenwu (NIH/NLM/NCBI) [C]
      • [Bioperl-l] GenBank entries creation dates   Miguel Pignatelli
      • [Bioperl-l] GenBank entries creation dates   Cui, Wenwu (NIH/NLM/NCBI) [C]
      • [Bioperl-l] GenBank entries creation dates   John N Calley
• [Bioperl-l] Very basic implementation of GenBank XML SeqIO module   Hilmar Lapp
• [Bioperl-l] module for pubchem queries   Robert Citek
  • [Bioperl-l] module for pubchem queries   Chris Fields
    • [Bioperl-l] module for pubchem queries   Robert Citek
      • [Bioperl-l] module for pubchem queries   Chris Fields
• [Bioperl-l] installing bioperl-1.5.2 errors:DB_File   Pan Zheng
  • [Bioperl-l] installing bioperl-1.5.2 errors:DB_File   Chris Fields
• [Bioperl-l] support of clustalw2 in bio::run::tool::alignment   sergei ryazansky
• [Bioperl-l] help installing bioperl with cygwin   slduncan at iastate.edu
  • [Bioperl-l] help installing bioperl with cygwin   Chris Fields
    • [Bioperl-l] help installing bioperl with cygwin   Samuel GRANJEAUD - IR/ICIM
• [Bioperl-l] How to analysis the relationship of my interesting KEGG pathways?   Jinyan Huang
• [Bioperl-l] Indexing large databases / BioSQL   Erik
  • [Bioperl-l] Indexing large databases / BioSQL   Bánk Beszteri
    • [Bioperl-l] Indexing large databases / BioSQL   Bánk Beszteri
      • [Bioperl-l] Indexing large databases / BioSQL   Chris Fields
      • [Bioperl-l] Indexing large databases / BioSQL   Bánk Beszteri
      • [Bioperl-l] Indexing large databases / BioSQL   Chris Fields
      • [Bioperl-l] Indexing large databases / BioSQL   Hilmar Lapp
• [Bioperl-l] Blast database sequence retrieval perl script   Heikki Lehvaslaiho
  • [Bioperl-l] Blast database sequence retrieval perl script   Hans Rudolf Hotz
• [Bioperl-l] How to analysis the relationship of my interesting KEGG pathways?   Dave Messina
• [Bioperl-l] question about clustalw module.   Frédéric Romagné
  • [Bioperl-l] question about clustalw module.   Jason Stajich
• [Bioperl-l] Bio::ASN1::EntrezGene parse so slowly?   zoujing
  • [Bioperl-l] Bio::ASN1::EntrezGene parse so slowly?   Sean Davis
    • [Bioperl-l] Bio::ASN1::EntrezGene parse so slowly?   zoujing
• [Bioperl-l] Error with "parse_entrez_gene_example.pl Sus_scrofa.ags"   zoujing
  • [Bioperl-l] Error with "parse_entrez_gene_example.pl Sus_scrofa.ags"   Stefan Kirov
• [Bioperl-l] Error with "parse_entrez_gene_example.pl Sus_scrofa.ags"   zoujing
  • [Bioperl-l] Error with "parse_entrez_gene_example.pl Sus_scrofa.ags"   Stefan Kirov
    • [Bioperl-l] Error with "parse_entrez_gene_example.pl Sus_scrofa.ags"   zoujing
• [Bioperl-l] xyplot glyph problem with previous aggregation   Luis A. M. Quintales
• [Bioperl-l] xyplot glyph problem with previous aggregation   Luis A. M. Quintales
  • [Bioperl-l] xyplot glyph problem with previous aggregation   Lincoln Stein
• [Bioperl-l] Bio::Factory::SequenceFactoryI SYNOPSIS example   Adam Sjøgren
  • [Bioperl-l] Bio::Factory::SequenceFactoryI SYNOPSIS example   Hilmar Lapp
    • [Bioperl-l] Bio::Factory::SequenceFactoryI SYNOPSIS example   Adam Sjøgren
      • [Bioperl-l] Bio::Factory::SequenceFactoryI SYNOPSIS example   Hilmar Lapp
• [Bioperl-l] Nucleotide Links in Gene DB (GenBank)   Arkady
• [Bioperl-l] [BioSQL-l] Loading sequences with novel NCBI taxon_id   Martin MOKREJŠ
• [Bioperl-l] bioperl-db   David Burt
• [Bioperl-l] personal vs list email   Hilmar Lapp
  • [Bioperl-l] [BioSQL-l] personal vs list email   Chris Fields
  • [Bioperl-l] personal vs list email   aaron.j.mackey at gsk.com
• [Bioperl-l] bioperl-db   Hilmar Lapp
• [Bioperl-l] bioperl-db   Hilmar Lapp
  • [Bioperl-l] bioperl-db   David Burt
• [Bioperl-l] bioperl-db   Hilmar Lapp
  • [Bioperl-l] bioperl-db   David Burt
  • [Bioperl-l] Tandem Repeats Finder?   Smithies, Russell
    • [Bioperl-l] Tandem Repeats Finder?   Ortutay Csaba Péter
• [Bioperl-l] Tandem Repeats Finder?   Smithies, Russell
• [Bioperl-l] how can I print a Bio::Tree newick sortby given list?   Albert Vilella
• [Bioperl-l] xyplot glyph: scale problems   Luis A. M. Quintales
• [Bioperl-l] Error installing XML::Parser   Sucheta Tripathy
• [Bioperl-l] bioperl-microarray: status?   Heikki Lehvaslaiho
  • [Bioperl-l] bioperl-microarray: status?   Chris Fields
  • [Bioperl-l] Finding seqs of given domain architecture   Jacob Keller
    • [Bioperl-l] Finding seqs of given domain architecture   Chris Fields
    • [Bioperl-l] Finding seqs of given domain architecture   Dave Messina
• [Bioperl-l] load_seqdatabase.pl --pipeline   Peter Müller
• [Bioperl-l] [bioperl-l] index::abstract on win and unix   Frédéric Romagné
  • [Bioperl-l] [bioperl-l] index::abstract on win and unix   Smithies, Russell
    • [Bioperl-l] index::abstract on win and unix   Frédéric Romagné
      • [Bioperl-l] index::abstract on win and unix   Jason Stajich
      • [Bioperl-l] index::abstract on win and unix   Frédéric Romagné
• [Bioperl-l] Can I use BLAST against a database like MySQL   Hubert Gaynor
  • [Bioperl-l] Can I use BLAST against a database like MySQL   Sean Davis
• [Bioperl-l] bioperl-db woes   Stefan Kirov
  • [Bioperl-l] bioperl-db woes   Chris Fields
  • [Bioperl-l] bioperl-db woes   Hilmar Lapp
• [Bioperl-l] bioperl-db woes   Stefan Kirov
  • [Bioperl-l] bioperl-db woes   Hilmar Lapp
    • [Bioperl-l] bioperl-db woes   Stefan Kirov
    • [Bioperl-l] bioperl-db woes   Chris Fields
      • [Bioperl-l] bioperl-db woes   Stefan Kirov
      • [Bioperl-l] bioperl-db woes   Chris Fields
      • [Bioperl-l] bioperl-db woes   Stefan Kirov
• [Bioperl-l] bioperl-db woes   Stefan Kirov
• [Bioperl-l] Can I use BLAST against a database like MySQL   Hubert Gaynor
  • [Bioperl-l] accessing params for custom glyphs?   Smithies, Russell
    • [Bioperl-l] [Gmod-gbrowse] accessing params for custom glyphs?   Lincoln Stein
• [Bioperl-l] Finding seqs of given domain architecture   Dave Messina
• [Bioperl-l] a question on obtaining HTML formatted Blast output along with the Blast hits image   Anand Venkatraman
• [Bioperl-l] [Proposed change] HSP::frame()   Chris Fields
• [Bioperl-l] Assembly.t test fails   Chris Fields
  • [Bioperl-l] Assembly.t test fails   Chris Fields
• [Bioperl-l] BioPerl Module to Parse BLAT alignment output   Edward Wijaya
  • [Bioperl-l] BioPerl Module to Parse BLAT alignment output   Chris Fields
    • [Bioperl-l] BioPerl Module to Parse BLAT alignment output   Jason Stajich
      • [Bioperl-l] BioPerl Module to Parse BLAT alignment output   Chris Fields
  • [Bioperl-l] BioPerl Module to Parse BLAT alignment output   Chris Fields
• [Bioperl-l] Fwd: [blast-announce] New BLAST URL available at the NCBI   Jason Stajich
  • [Bioperl-l] Fwd: [blast-announce] New BLAST URL available at the NCBI   Chris Fields
• [Bioperl-l] Question on integrating Bio::Graphics with Bio::SearchIO::Writer::HTMLResultWriter   Anand Venkatraman
  • [Bioperl-l] Question on integrating Bio::Graphics with Bio::SearchIO::Writer::HTMLResultWriter   Jason Stajich
    • [Bioperl-l] Question on integrating Bio::Graphics with Bio::SearchIO::Writer::HTMLResultWriter   Anand Venkatraman
      • [Bioperl-l] Question on integrating Bio::Graphics with Bio::SearchIO::Writer::HTMLResultWriter   Jason Stajich
• [Bioperl-l] WebBlat, where'd it go?   Arkady
  • [Bioperl-l] WebBlat, where'd it go?   Spiros Denaxas
  • [Bioperl-l] WebBlat, where'd it go?   Chris Fields
• [Bioperl-l] bioperl installation problem   Sebastian Bassi
  • [Bioperl-l] bioperl installation problem   Jason Stajich
    • [Bioperl-l] bioperl installation problem   Sebastian Bassi
  • [Bioperl-l] bioperl installation problem   Sendu Bala
• [Bioperl-l] addition of GD::graphic object to Bio::Graphics   sergei ryazansky
  • [Bioperl-l] addition of GD::graphic object to Bio::Graphics   Smithies, Russell
    • [Bioperl-l] addition of GD::graphic object to Bio::Graphics   Chris Fields
      • [Bioperl-l] addition of GD::graphic object to Bio::Graphics   Smithies, Russell
      • [Bioperl-l] addition of GD::graphic object to Bio::Graphics   Lincoln Stein
      • [Bioperl-l] addition of GD::graphic object to Bio::Graphics   sergei ryazansky
    • [Bioperl-l] addition of GD::graphic object to Bio::Graphics   sergei ryazansky
• [Bioperl-l] translate() oddities   Derek Gatherer
  • [Bioperl-l] translate() oddities   Stefan Kirov
    • [Bioperl-l] translate() oddities   Chris Fields
  • [Bioperl-l] translate() oddities   Tristan Lefebure
    • [Bioperl-l] translate() oddities   Laurent DOUCHY
• [Bioperl-l] translate() oddities   Derek Gatherer
  • [Bioperl-l] translate() oddities   Roy Chaudhuri
    • [Bioperl-l] translate() oddities   Chris Fields
• [Bioperl-l] alignment by TCoffee as a subroutine   sergei ryazansky
  • [Bioperl-l] alignment by TCoffee as a subroutine   Sendu Bala
  • [Bioperl-l] alignment by TCoffee as a subroutine   sergei ryazansky
    • [Bioperl-l] alignment by TCoffee as a subroutine   Sendu Bala
      • [Bioperl-l] alignment by TCoffee as a subroutine   sergei ryazansky
      • [Bioperl-l] alignment by TCoffee as a subroutine   Sebastien MORETTI
      • [Bioperl-l] alignment by TCoffee as a subroutine   sergei ryazansky
      • [Bioperl-l] alignment by TCoffee as a subroutine   Albert Vilella
      • [Bioperl-l] alignment by TCoffee as a subroutine   sergei ryazansky
      • [Bioperl-l] alignment by TCoffee as a subroutine   Sendu Bala
      • [Bioperl-l] alignment by TCoffee as a subroutine   Sendu Bala
• [Bioperl-l] BOSC 2008 Announcement and Call For Submissions   darin.london at duke.edu
• [Bioperl-l] Fwd: Re: alignment by TCoffee as a subroutine   Sergei Ryazansky
  • [Bioperl-l] Fwd: Re: alignment by TCoffee as a subroutine   Chris Fields
    • [Bioperl-l] Fwd: Re: alignment by TCoffee as a subroutine   Sergei Ryazansky
      • [Bioperl-l] Fwd: Re: alignment by TCoffee as a subroutine   Chris Fields
• [Bioperl-l] Fwd: Re: alignment by TCoffee as a subroutine   Sergei Ryazansky
  • [Bioperl-l] Fwd: Re: alignment by TCoffee as a subroutine   Chris Fields

Last message date: Wed Apr 30 14:29:28 EDT 2008
Archived on: Wed Apr 30 14:29:54 EDT 2008

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