April 2010 Archives by thread

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Starting: Thu Apr 1 12:41:23 UTC 2010
Ending: Fri Apr 30 14:16:59 UTC 2010
Messages: 256

• [Bioperl-l] root node branch length in newick trees written incorrectly   Dave Messina
  • [Bioperl-l] root node branch length in newick trees writtenincorrectly   Mark A. Jensen
    • [Bioperl-l] root node branch length in newick trees writtenincorrectly   Dave Messina
      • [Bioperl-l] root node branch length in newick treeswrittenincorrectly   Mark A. Jensen
      • [Bioperl-l] root node branch length in newick treeswrittenincorrectly   Dave Messina
• [Bioperl-l] Google summer of code   Benard Kulohoma
  • [Bioperl-l] Google summer of code   Robert Buels
    • [Bioperl-l] Google summer of code   Chris Fields
• [Bioperl-l] GSoC 2010   Mark A. Jensen
  • [Bioperl-l] GSoC 2010   Chris Fields
• [Bioperl-l] Google Summer of Code   Mark A. Jensen
  • [Bioperl-l] Google Summer of Code   Chris Fields
• [Bioperl-l] Application on BioPerl Summer of Code   Jun Yin
• [Bioperl-l] GSoC 2010   Hilmar Lapp
• [Bioperl-l] summer code project on Bioperl   Robert Buels
• [Bioperl-l] Conserved SNP   shafeeq rim
• [Bioperl-l] BOSC and OpenBio solution challenge reminder -- April 15th   Brad Chapman
• [Bioperl-l] A google soc 2010 aspirant   PRAVEEN KUMAR K P
  • [Bioperl-l] A google soc 2010 aspirant   Chris Fields
    • [Bioperl-l] A google soc 2010 aspirant   Robert Buels
• [Bioperl-l] BlastPlus usage inquiry   Mark A. Jensen
  • [Bioperl-l] BlastPlus usage inquiry   Chris Fields
    • [Bioperl-l] BlastPlus usage inquiry   Peter
      • [Bioperl-l] BlastPlus usage inquiry   Chris Fields
• [Bioperl-l] the failed test for installation of Bioperl-run-1.6.1   玉木秀幸
• [Bioperl-l] Major BioPerl reorganization   Johnathon Anderson
  • [Bioperl-l] Major BioPerl reorganization   Chris Fields
• [Bioperl-l] Google Summer of Code is *ON* for OBF projects!   Robert Buels
• [Bioperl-l] Reminder: GSoC student applications due April 9, 19:00 UTC   Robert Buels
• [Bioperl-l] Google Summer of Code   Robert Buels
  • [Bioperl-l] Google Summer of Code   Murtaza
• [Bioperl-l] The Bioperl SVN server down?   Torsten Seemann
  • [Bioperl-l] [Fwd: The Bioperl SVN server down?]   Jason Stajich
• [Bioperl-l] Primer3 Redux   Torsten Seemann
  • [Bioperl-l] Primer3 Redux   Chris Fields
• [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   KOVALIC, DAVID K [AG/1000]
  • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Jason Stajich
    • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Peter
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Chris Fields
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   KOVALIC, DAVID K [AG/1000]
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Chris Fields
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Jason Stajich
  • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Cook, Malcolm
    • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Peter
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Chris Fields
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Peter
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Chris Fields
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Peter
      • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Chris Fields
• [Bioperl-l] Regarding google summer of code 2010   Priyanka Joshi
• [Bioperl-l] Application on BioPerl Summer of Code   Jun Yin
  • [Bioperl-l] Application on BioPerl Summer of Code   Chris Fields
• [Bioperl-l] Application on BioPerl Summer of Code   Jun Yin
• [Bioperl-l] Bio-Perl workload for benchmarking Perl   Christopher Fields
  • [Bioperl-l] Bio-Perl workload for benchmarking Perl   Robert Buels
    • [Bioperl-l] Bio-Perl workload for benchmarking Perl   Steffen Schwigon
      • [Bioperl-l] Bio-Perl workload for benchmarking Perl   Robert Bradbury
      • [Bioperl-l] Bio-Perl workload for benchmarking Perl   Steffen Schwigon
  • [Bioperl-l] Bio-Perl workload for benchmarking Perl   Steffen Schwigon
• [Bioperl-l] Bio::Index::BlastTable->fetch_report   Tristan Lefebure
  • [Bioperl-l] Bio::Index::BlastTable->fetch_report   Tristan Lefebure
• [Bioperl-l] Project: BioPerl 2.0 (and beyond)   lin yu
  • [Bioperl-l] Project: BioPerl 2.0 (and beyond)   Robert Bradbury
    • [Bioperl-l] Project: BioPerl 2.0 (and beyond)   Peter
    • [Bioperl-l] Project: BioPerl 2.0 (and beyond)   Chris Fields
      • [Bioperl-l] Project: BioPerl 2.0 (and beyond)   lin yu
• [Bioperl-l] (no subject)   Bachar CHEAIB
• [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Till Bayer
  • [Bioperl-l] Bio::Index::Fastq - Interface for indexing (multiple) fastq files failure   Chris Fields
• [Bioperl-l] Support for KEGG   ARTHUR GOLDBERG
  • [Bioperl-l] Support for KEGG   Chris Fields
  • [Bioperl-l] Support for KEGG   Brian Osborne
• [Bioperl-l] parsing blast reports   Joan Segura Mora
  • [Bioperl-l] parsing blast reports   Chris Fields
  • [Bioperl-l] parsing blast reports   Dave Messina
    • [Bioperl-l] parsing blast reports   Chris Fields
      • [Bioperl-l] parsing blast reports   Dave Messina
      • [Bioperl-l] parsing blast reports   Gregory Jordan
      • [Bioperl-l] parsing blast reports   Chris Fields
      • [Bioperl-l] parsing blast reports   Chris Fields
• [Bioperl-l] [Gmod-gbrowse] Gmod-gbrowse Digest, Vol 47, Issue 25   Lincoln Stein
  • [Bioperl-l] [Gmod-gbrowse] Gmod-gbrowse Digest, Vol 47, Issue 25   Jayaraman, Pushkala
• [Bioperl-l] Project: R and Perl GSoC, was: BioPerl 2.0 (and beyond)   Peter
  • [Bioperl-l] Project: R and Perl GSoC, was: BioPerl 2.0 (and beyond)   Robert Buels
    • [Bioperl-l] Project: R and Perl GSoC, was: BioPerl 2.0 (and beyond)   Chris Fields
• [Bioperl-l] PAML   Jason Stajich
• [Bioperl-l] Bio::DB::SeqFeature::Store::Pg index on "name": why varchar_pattern_ops?   Robert Buels
  • [Bioperl-l] Bio::DB::SeqFeature::Store::Pg index on "name": why varchar_pattern_ops?   Scott Cain
    • [Bioperl-l] Bio::DB::SeqFeature::Store::Pg index on "name": why varchar_pattern_ops?   Robert Buels
      • [Bioperl-l] Bio::DB::SeqFeature::Store::Pg index on "name": why varchar_pattern_ops?   Scott Cain
• [Bioperl-l] Bio::DB::SeqFeature::Store::Pg index on "name": why varchar_pattern_ops?   randalls at bioinfo.wsu.edu
• [Bioperl-l] Bio::SeqIO::genbank   Wayne Davis
  • [Bioperl-l] Bio::SeqIO::genbank   Dave Messina
    • [Bioperl-l] Bio::SeqIO::genbank   Chris Fields
      • [Bioperl-l] Bio::SeqIO::genbank   Dave Messina
• [Bioperl-l] parsering signal-p output   Diego Chaves Moreno
  • [Bioperl-l] parsering signal-p output   Dave Messina
• [Bioperl-l] Bio::SeqIO::genbank   Mark A. Jensen
  • [Bioperl-l] Bio::SeqIO::genbank   Chris Fields
• [Bioperl-l] Bio::SeqIO::genbank   Dave Messina
• [Bioperl-l] SeqIO::abi use   Tom Keller
  • [Bioperl-l] SeqIO::abi use   Roy Chaudhuri
    • [Bioperl-l] SeqIO::abi use   Phillip San Miguel
  • [Bioperl-l] SeqIO::abi use   Cook, Malcolm
  • [Bioperl-l] SeqIO::abi use   Joel Martin
• [Bioperl-l] bp_genbank2gff3.pl - circular genomes, origin-spanning features, and GFF3   Leighton Pritchard
  • [Bioperl-l] bp_genbank2gff3.pl - circular genomes, origin-spanning features, and GFF3   Chris Fields
    • [Bioperl-l] bp_genbank2gff3.pl - circular genomes, origin-spanning features, and GFF3   Leighton Pritchard
• [Bioperl-l] bp_genbank2gff3.pl - circular genomes, origin-spanning features, and GFF3   Leighton Pritchard
• [Bioperl-l] Project: BioPerl 2.0 (and beyond)   Moore, Jonathan
• [Bioperl-l] Genentech is hiring [more].   George Hartzell
• [Bioperl-l] Problems getting bioperl to run on SnowLeopard   Mgavi Brathwaite
  • [Bioperl-l] Problems getting bioperl to run on SnowLeopard   Dave Messina
• [Bioperl-l] problem with bioperl-ext   Tom Keller
  • [Bioperl-l] problem with bioperl-ext   Joel Martin
• [Bioperl-l] bp_genbank2gff3.pl - circular genomes, origin-spanning features, and GFF3   Leighton Pritchard
  • [Bioperl-l] bp_genbank2gff3.pl - circular genomes, origin-spanning features, and GFF3   Chris Fields
• [Bioperl-l] Bioperl on GitHub   Peter
  • [Bioperl-l] Bioperl on GitHub   Chris Fields
    • [Bioperl-l] Bioperl on GitHub   Jason Stajich
      • [Bioperl-l] Bioperl on GitHub   Peter
      • [Bioperl-l] Bioperl on GitHub   Chris Fields
      • [Bioperl-l] Bioperl on GitHub   Chris Fields
      • [Bioperl-l] Bioperl on GitHub   Jonathan Leto
• [Bioperl-l] Perl Conference at OSU, June 21-23rd 2010   Heath Bair
• [Bioperl-l] Tools::Run::Primer3Redux   Ma, Man Chun John
  • [Bioperl-l] Tools::Run::Primer3Redux   Chris Fields
    • [Bioperl-l] Tools::Run::Primer3Redux   Peter
      • [Bioperl-l] Tools::Run::Primer3Redux   Chris Fields
• [Bioperl-l] strange behavior of Bio::Tools::Run::Alignment::StandAloneFasta   Dimitar Kenanov
  • [Bioperl-l] strange behavior of Bio::Tools::Run::Alignment::StandAloneFasta   Chris Fields
    • [Bioperl-l] strange behavior of Bio::Tools::Run::Alignment::StandAloneFasta   Aaron Mackey
      • [Bioperl-l] strange behavior of Bio::Tools::Run::Alignment::StandAloneFasta   Chris Fields
• [Bioperl-l] question about Bio::Tools::Run::StandAloneBlast   Dimitar Kenanov
  • [Bioperl-l] question about Bio::Tools::Run::StandAloneBlast   Dave Messina
    • [Bioperl-l] question about Bio::Tools::Run::StandAloneBlast   Chris Fields
  • [Bioperl-l] question about Bio::Tools::Run::StandAloneBlast   Mark A. Jensen
• [Bioperl-l] Fwd: question about Bio::Tools::Run::StandAloneBlast   Robert Bradbury
  • [Bioperl-l] Fwd: question about Bio::Tools::Run::StandAloneBlast   Chris Fields
    • [Bioperl-l] Fwd: question about Bio::Tools::Run::StandAloneBlast   Robert Bradbury
      • [Bioperl-l] Fwd: question about Bio::Tools::Run::StandAloneBlast   Chris Fields
      • [Bioperl-l] Fwd: question about Bio::Tools::Run::StandAloneBlast   Robert Bradbury
      • [Bioperl-l] Fwd: question about Bio::Tools::Run::StandAloneBlast   Chris Fields
• [Bioperl-l] Tm calculation using thermodynamic concept for Degenerate Primers?   Bhakti Dwivedi
  • [Bioperl-l] Tm calculation using thermodynamic concept for Degenerate Primers?   Giles Weaver
  • [Bioperl-l] Tm calculation using thermodynamic concept for Degenerate Primers?   Giles Weaver
• [Bioperl-l] How to pull a codon by position from a rich sequence object   Phillip San Miguel
• [Bioperl-l] General analysis report format convention   MadraghRua
• [Bioperl-l] Fwd: about Bio::Tools::Run::Alignment::StandAloneFasta   Chris Fields
• [Bioperl-l] Bio::DB::Taxonomy and each_Descendent   Eric Collins
  • [Bioperl-l] Bio::DB::Taxonomy and each_Descendent   Eric Collins
    • [Bioperl-l] Bio::DB::Taxonomy and each_Descendent   Chris Fields
• [Bioperl-l] Possible migration to git/github   Chris Fields
  • [Bioperl-l] Possible migration to git/github   Mark A. Jensen
    • [Bioperl-l] Possible migration to git/github   Heikki Lehvaslaiho
      • [Bioperl-l] Possible migration to git/github   Chris Fields
      • [Bioperl-l] Possible migration to git/github   Jonathan Leto
      • [Bioperl-l] Possible migration to git/github   Chris Fields
  • [Bioperl-l] Possible migration to git/github   D. Joe Anderson
    • [Bioperl-l] Possible migration to git/github   Peter
      • [Bioperl-l] Possible migration to git/github   D. Joe Anderson
      • [Bioperl-l] Possible migration to git/github   Peter
      • [Bioperl-l] Possible migration to git/github   Chris Fields
      • [Bioperl-l] Possible migration to git/github   Chris Fields
      • [Bioperl-l] Possible migration to git/github   Peter
      • [Bioperl-l] Possible migration to git/github   Hilmar Lapp
  • [Bioperl-l] Possible migration to git/github   Mark A. Jensen
    • [Bioperl-l] Possible migration to git/github   Christopher Fields
      • [Bioperl-l] Possible migration to git/github   Mark A. Jensen
      • [Bioperl-l] Possible migration to git/github   Christopher Fields
• [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that is executed?   Ben Bimber
  • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command thatis executed?   Mark A. Jensen
  • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command thatis executed?   Mark A. Jensen
• [Bioperl-l] [Bug 2937] Strand in fasta35 output does not seem to be parsed   Dave Messina
  • [Bioperl-l] [Bug 2937] Strand in fasta35 output does not seem to be parsed   Aaron Mackey
    • [Bioperl-l] [Bug 2937] Strand in fasta35 output does not seem to be parsed   michael watson (IAH-C)
      • [Bioperl-l] [Bug 2937] Strand in fasta35 output does not seem to be parsed   Aaron Mackey
      • [Bioperl-l] [Bug 2937] Strand in fasta35 output does not seem to be parsed   michael watson (IAH-C)
• [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command thatis executed?   Mark A. Jensen
  • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command thatis executed?   Chris Fields
    • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the commandthatis executed?   Mark A. Jensen
  • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command thatis executed?   Peter
    • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command thatis executed?   Chris Fields
      • [Bioperl-l] Wrapper definitions format standard (was: Bio::Tools::Run::WrapperBase: Capture the command thatis executed?)   Mark A. Jensen
• [Bioperl-l] Interfaces to HGNC/genenames.org?   Robert Bradbury
  • [Bioperl-l] Interfaces to HGNC/genenames.org?   Sean Davis
• [Bioperl-l] Gene Expression Omnibus Data interface?   Robert Bradbury
  • [Bioperl-l] Gene Expression Omnibus Data interface?   Sean Davis
    • [Bioperl-l] Gene Expression Omnibus Data interface?   Sean Davis
• [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that is executed?   Dan Kortschak
  • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that is executed?   Ben Bimber
• [Bioperl-l] NCBI efetch: request limits and getting dates fast   Dave Messina
  • [Bioperl-l] NCBI efetch: request limits and getting dates fast   Chris Fields
    • [Bioperl-l] NCBI efetch: request limits and getting dates fast   Dave Messina
  • [Bioperl-l] NCBI efetch: request limits and getting dates fast   Mark A. Jensen
    • [Bioperl-l] NCBI efetch: request limits and getting dates fast   Chris Fields
      • [Bioperl-l] NCBI efetch: request limits and getting dates fast   Mark A. Jensen
      • [Bioperl-l] NCBI efetch: request limits and getting dates fast   Dave Messina
• [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that is executed?   Dan Kortschak
  • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that is executed?   Mark A. Jensen
    • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that is executed?   Dan Kortschak
      • [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that is executed?   Chris Fields
• [Bioperl-l] Computational Phyloinformatics: A BGI-Shenzhen and NESCent Course, 5/8 - 17/8 '10   Rutger Vos
• [Bioperl-l] last execution   Ben Bimber
• [Bioperl-l] Bio::DB::Taxonomy and each_Descendent   Eric Collins
• [Bioperl-l] SimpleAlign Ids   Bernd Web
  • [Bioperl-l] SimpleAlign Ids   Mark A. Jensen
    • [Bioperl-l] SimpleAlign Ids   Chris Fields
• [Bioperl-l] Stem-and-leaf plot for fastq scores in a file?   Albert Vilella
• [Bioperl-l] about Bio::Tools::Run::Alignment::StandAloneFasta   Dimitar Kenanov
  • [Bioperl-l] about Bio::Tools::Run::Alignment::StandAloneFasta   Mark A. Jensen
  • [Bioperl-l] about Bio::Tools::Run::Alignment::StandAloneFasta   Peter
• [Bioperl-l] Seeking to Contribute   Iftekharul Haque
  • [Bioperl-l] Seeking to Contribute   Robert Buels
    • [Bioperl-l] Seeking to Contribute   Iftekharul Haque
• [Bioperl-l] Add a kind of hspsepQmax/hspsepSmax (like WuBlast has) in Bio::Search::Tiling::MapTiling   Frederic.SAPET at biogemma.com
  • [Bioperl-l] Add a kind of hspsepQmax/hspsepSmax (like WuBlast has)in Bio::Search::Tiling::MapTiling   Mark A. Jensen
  • [Bioperl-l] Add a kind of hspsepQmax/hspsepSmax (like WuBlast has)in Bio::Search::Tiling::MapTiling   Mark A. Jensen
    • [Bioperl-l] Add a kind of hspsepQmax/hspsepSmax (like WuBlast has)in Bio::Search::Tiling::MapTiling   Frederic.SAPET at biogemma.com
• [Bioperl-l] Bug # 2908: ecoli.nt not available   Iftekharul Haque
  • [Bioperl-l] Bug # 2908: ecoli.nt not available   Dave Messina
    • [Bioperl-l] Bug # 2908: ecoli.nt not available   Chris Fields
      • [Bioperl-l] Bug # 2908: ecoli.nt not available   Iftekharul Haque
      • [Bioperl-l] Bug # 2908: ecoli.nt not available   Dave Messina
• [Bioperl-l] Bio::SeqIO question   Chet Seligman
  • [Bioperl-l] Bio::SeqIO question   Chris Fields
• [Bioperl-l] CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010   Amandeep Sidhu
• [Bioperl-l] Google Summer of Code - accepted students   Robert Buels
• [Bioperl-l] wiki citations page broken: "Biblio" Mediawiki extension?   Jay Hannah
  • [Bioperl-l] wiki citations page broken: "Biblio" Mediawiki extension?   Peter
• [Bioperl-l] Blasting multiple protein sequences.   Chet Seligman
  • [Bioperl-l] Blasting multiple protein sequences.   Christopher Bottoms
    • [Bioperl-l] Blasting multiple protein sequences.   Chet Seligman
• [Bioperl-l] Google Summer of Code - accepted students   Robert Buels
• [Bioperl-l] about gene "boundaries"   Dimitar Kenanov
  • [Bioperl-l] about gene "boundaries"   Hans-Rudolf Hotz
  • [Bioperl-l] about gene "boundaries"   Scott Cain
  • [Bioperl-l] about gene "boundaries"   Chris Fields
    • [Bioperl-l] about gene "boundaries"   Dimitar Kenanov
    • [Bioperl-l] about gene "boundaries"   Dimitar Kenanov
      • [Bioperl-l] about gene "boundaries"   Cook, Malcolm
    • [Bioperl-l] about gene "boundaries"   shafeeq rim
• [Bioperl-l] out of memory issue   shalabh sharma
  • [Bioperl-l] out of memory issue   Dave Messina
  • [Bioperl-l] out of memory issue   Mark A. Jensen
  • [Bioperl-l] out of memory issue   Andreas Kahari
    • [Bioperl-l] out of memory issue   shalabh sharma
      • [Bioperl-l] out of memory issue   Mark A. Jensen
    • [Bioperl-l] out of memory issue   Smithies, Russell
• [Bioperl-l] out of memory issue   Dan Kortschak
  • [Bioperl-l] out of memory issue   Chris Fields
    • [Bioperl-l] out of memory issue   shalabh sharma
• [Bioperl-l] Setting Parameters when Using Remote Blast   Lakshmi Kastury
• [Bioperl-l] RFC: SNP::Inherit   Christopher Bottoms
• [Bioperl-l] about exonerate   Dimitar Kenanov
• [Bioperl-l] question about Bio::Tools::Run::Genewise   Dimitar Kenanov

Last message date: Fri Apr 30 14:16:59 UTC 2010
Archived on: Mon Jun 16 02:50:28 UTC 2014

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