December 2009 Archives by thread

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Starting: Tue Dec 1 07:28:33 EST 2009
Ending: Mon Dec 28 20:51:40 EST 2009
Messages: 157

• [Biopython-dev] [Bug 2957] GenBank Writer Should Write Out Date   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Fwd: [Utilities-announce] NCBI E-Utility Policy Change   Peter
• [Biopython-dev] Bio.GFF and Brad's code   Brad Chapman
  • [Biopython-dev] Bio.GFF and Brad's code   Michiel de Hoon
    • [Biopython-dev] Bio.GFF and Brad's code   Brad Chapman
      • [Biopython-dev] Bio.GFF and Brad's code   Peter
      • [Biopython-dev] Bio.GFF and Brad's code   Brad Chapman
      • [Biopython-dev] Bio.GFF and Brad's code   Peter
      • [Biopython-dev] Bio.GFF and Brad's code   Brad Chapman
      • [Biopython-dev] Bio.GFF and Brad's code   Peter
      • [Biopython-dev] Bio.GFF and Brad's code   Peter
      • [Biopython-dev] Bio.GFF and Brad's code   Peter
      • [Biopython-dev] Bio.GFF and Brad's code   Michiel de Hoon
  • [Biopython-dev] Bio.GFF and Brad's code   Peter
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2738] Speed up GenBank parsing, in particular location parsing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2961] New: Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2961] Adding undocumented file format switches to MUSCLE wrapper   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Genetic Code   Matthias Bernt
  • [Biopython-dev] Genetic Code   Peter
    • [Biopython-dev] Genetic Code   Peter
• [Biopython-dev] [Bug 2962] New: deprecated generic code   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2962] deprecated generic code   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2962] deprecated generic code   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2963] New: deprecated genetic code   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2963] deprecated genetic code   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2964] New: placing x-axis of graph track at the bottom or top of the track   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track in GenomeDiagram   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track in GenomeDiagram   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track in GenomeDiagram   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track in GenomeDiagram   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track in GenomeDiagram   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track in GenomeDiagram   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track in GenomeDiagram   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2964] placing x-axis of graph track at the bottom or top of the track in GenomeDiagram   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Biopython git access for Cymon   Peter
  • [Biopython-dev] Biopython git access for Cymon   Brad Chapman
• [Biopython-dev] Plans for Biopython 1.53   Peter
  • [Biopython-dev] Plans for Biopython 1.53   Eric Talevich
    • [Biopython-dev] Plans for Biopython 1.53   Peter
    • [Biopython-dev] Plans for Biopython 1.53   Brad Chapman
      • [Biopython-dev] Plans for Biopython 1.53   Kyle Ellrott
      • [Biopython-dev] Plans for Biopython 1.53   Peter
      • [Biopython-dev] Plans for Biopython 1.53   Kyle Ellrott
      • [Biopython-dev] Plans for Biopython 1.53   Peter
      • [Biopython-dev] Plans for Biopython 1.53   Peter
      • [Biopython-dev] Plans for Biopython 1.53   Peter
      • [Biopython-dev] Plans for Biopython 1.53   Peter
      • [Biopython-dev] Plans for Biopython 1.53   Peter
      • [Biopython-dev] Plans for Biopython 1.53   Kyle Ellrott
  • [Biopython-dev] Plans for Biopython 1.53   Peter
• [Biopython-dev] [Bug 2965] New: Updating Bio.Restriction with latest REBASE data   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2965] Updating Bio.Restriction with latest REBASE data   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2965] Updating Bio.Restriction with latest REBASE data   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2966] New: Primer3Commandline does not use EMBOSS 6.1.0 arguments   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2966] Primer3Commandline does not use EMBOSS 6.1.0 arguments   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2966] Primer3Commandline does not use EMBOSS 6.1.0 arguments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2967] New: AbstractCommandline silently accepts invalid parameter options   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2967] AbstractCommandline silently accepts invalid parameter options   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2967] AbstractCommandline silently accepts invalid parameter options   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2967] AbstractCommandline silently accepts invalid parameter options   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2967] AbstractCommandline silently accepts invalid parameter options   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2967] AbstractCommandline silently accepts invalid parameter options   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2967] AbstractCommandline silently accepts invalid parameter options   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2968] New: Modifications to Emboss eprimer3 parser and associated files   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2968] Modifications to Emboss eprimer3 parser and associated files   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2969] New: Addition of SeqmatchallCommandline to Emboss/Applications.py   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2969] Addition of SeqmatchallCommandline to Emboss/Applications.py   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2969] Addition of SeqmatchallCommandline to Emboss/Applications.py   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2969] Addition of SeqmatchallCommandline to Emboss/Applications.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Removing C implementation of deprecated listfns, mathfns, stringfns   Peter
  • [Biopython-dev] Removing C implementation of deprecated listfns, mathfns, stringfns   Peter
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2495] parse element symbols for ATOM/HETATM records (Bio.PDB.PDBParser)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Code freeze for Biopython 1.53   Peter
  • [Biopython-dev] Code freeze for Biopython 1.53   Peter
    • [Biopython-dev] Code freeze for Biopython 1.53   Peter
      • [Biopython-dev] Code freeze for Biopython 1.53   Brad Chapman
      • [Biopython-dev] Code freeze for Biopython 1.53   Peter
• [Biopython-dev] [Bug 2895] Bio.Restriction.Restriction_Dictionary Jython Error Fix+Patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2892] Jython MatrixInfo.py fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2895] Bio.Restriction.Restriction_Dictionary Jython Error Fix+Patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2893] Jython test_prosite fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2893] Jython test_prosite fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2895] Bio.Restriction.Restriction_Dictionary Jython Error Fix+Patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2807] Clustalw return codes   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2820] Convert test_PDB.py to unittest   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Biopython 1.53 released   Peter
• [Biopython-dev] zxJDBC support for BioSQL   Kyle Ellrott
  • [Biopython-dev] zxJDBC support for BioSQL   Peter
    • [Biopython-dev] zxJDBC support for BioSQL   Peter
    • [Biopython-dev] zxJDBC support for BioSQL   Peter
    • [Biopython-dev] zxJDBC support for BioSQL   Kyle Ellrott
• [Biopython-dev] code credits   Marshall Hampton
  • [Biopython-dev] code credits   Kyle Ellrott
    • [Biopython-dev] code credits   Paul B
      • [Biopython-dev] code credits   Peter
      • [Biopython-dev] code credits   Marshall Hampton
      • [Biopython-dev] code credits   Peter
      • [Biopython-dev] code credits   Brad Chapman
      • [Biopython-dev] code credits   Peter
      • [Biopython-dev] code credits   Peter
      • [Biopython-dev] code credits   Peter
• [Biopython-dev] [Bug 2938] Bio.Entrez.read() returns empty string for HTML (not an error)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2698] Attempt at a unit test for MaxEntrophy   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2693] LogisticRegression convergence criterion is too lenient   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2697] MaxEntropy calculate function assumes integer values for class and convergence criteria is hard coded   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2938] Bio.Entrez.read() returns empty string for HTML (not an error)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2697] MaxEntropy calculate function assumes integer values for class and convergence criteria is hard coded   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2947] Bio.HMM calculates wrong viterbi path   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2697] MaxEntropy calculate function assumes integer values for class and convergence criteria is hard coded   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2947] Bio.HMM calculates wrong viterbi path   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Biopython] SeqIO.index improvement suggestions   Renato Alves
  • [Biopython-dev] [Biopython] SeqIO.index improvement suggestions   Peter
    • [Biopython-dev] SeqIO.index improvement suggestions   Renato Alves
    • [Biopython-dev] [Biopython] SeqIO.index improvement suggestions   Eric Talevich
      • [Biopython-dev] SeqIO.index improvement suggestions   Renato Alves
      • [Biopython-dev] [Biopython] SeqIO.index improvement suggestions   Peter
      • [Biopython-dev] [Biopython] SeqIO.index improvement suggestions   Peter
      • [Biopython-dev] [Biopython] SeqIO.index improvement suggestions   Peter
• [Biopython-dev] [Bug 2927] Problem parsing PSI-BLAST plain text output with NCBStandalone.PSIBlastParser   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2927] Problem parsing PSI-BLAST plain text output with NCBStandalone.PSIBlastParser   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2927] Problem parsing PSI-BLAST plain text output with NCBStandalone.PSIBlastParser   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2927] Problem parsing PSI-BLAST plain text output with NCBStandalone.PSIBlastParser   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Fwd: Debian python-biopython packaging for Biopython 1.53   Peter Cock
• [Biopython-dev] [Bug 2927] Problem parsing PSI-BLAST plain text output with NCBStandalone.PSIBlastParser   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Code review request for phyloxml branch   Eric Talevich

Last message date: Mon Dec 28 20:51:40 EST 2009
Archived on: Mon Dec 28 20:52:16 EST 2009

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