January 2010 Archives by thread

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Starting: Sat Jan 2 08:57:28 UTC 2010
Ending: Mon Feb 1 03:47:05 UTC 2010
Messages: 228

• [Bioperl-l] Downloading from dbEST by taxon range   Albert Vilella
  • [Bioperl-l] Downloading from dbEST by taxon range   Jason Stajich
    • [Bioperl-l] Downloading from dbEST by taxon range   Albert Vilella
• [Bioperl-l] How to read in the whole fasta file in the memory?   Jean-Marc Frigerio INRA
  • [Bioperl-l] How to read in the whole fasta file in the memory?   Jason Stajich
  • [Bioperl-l] How to read in the whole fasta file in the memory?   Chris Fields
• [Bioperl-l] indexed fastq files   Albert Vilella
  • [Bioperl-l] indexed fastq files   Chris Fields
• [Bioperl-l] targetp request   Vijayaraj Nagarajan
  • [Bioperl-l] targetp request   Emmanuel Quevillon
    • [Bioperl-l] targetp request   Kevin Brown
• [Bioperl-l] Bio::DB::Sam strange behaviour for read pairs   Frank Schwach
• [Bioperl-l] Data missing into Annotation object using Bio::SeqIO (Genbank)   Hilmar Lapp
• [Bioperl-l] Regarding blast in Bioperl   Roopa Raghuveer
  • [Bioperl-l] Regarding blast in Bioperl   Mark A. Jensen
    • [Bioperl-l] Regarding blast in Bioperl   Roopa Raghuveer
      • [Bioperl-l] Regarding blast in Bioperl   Mark A. Jensen
      • [Bioperl-l] Regarding blast in Bioperl   Robert Bradbury
• [Bioperl-l] Cladogram construction   Julian Onions
• [Bioperl-l] Ensembl problems   Robert Bradbury
  • [Bioperl-l] Ensembl problems   Chris Fields
  • [Bioperl-l] Ensembl problems   Andreas Kähäri
    • [Bioperl-l] Ensembl problems   Robert Bradbury
      • [Bioperl-l] Ensembl problems   Albert Vilella
• [Bioperl-l] how to retrieve organism name from accession number?   Smithies, Russell
  • [Bioperl-l] how to retrieve organism name from accession number?   Chris Fields
    • [Bioperl-l] how to retrieve organism name from accession number?   Smithies, Russell
      • [Bioperl-l] how to retrieve organism name from accession number?   Smithies, Russell
      • [Bioperl-l] how to retrieve organism name from accession number?   Chris Fields
      • [Bioperl-l] how to retrieve organism name from accession number?   Smithies, Russell
      • [Bioperl-l] how to retrieve organism name from accession number?   Chris Fields
      • [Bioperl-l] how to retrieve organism name from accession number?   Smithies, Russell
      • [Bioperl-l] how to retrieve organism name from accession number?   Chris Fields
      • [Bioperl-l] how to retrieve organism name from accession number?   Smithies, Russell
      • [Bioperl-l] how to retrieve organism name from accession number?   Chris Fields
      • [Bioperl-l] how to retrieve organism name from accession number?   Mark A. Jensen
• [Bioperl-l] GBrowse.org project   Alessandra
• [Bioperl-l] GMOD BioPerl Meeting   Chris Fields
• [Bioperl-l] Bio:DB:SeqFeature - MySql - Java   Bernd Jagla
  • [Bioperl-l] Bio:DB:SeqFeature - MySql - Java   Peter
    • [Bioperl-l] Bio:DB:SeqFeature - MySql - Java   Bernd Jagla
• [Bioperl-l] create Bio::AlignIO object from hash   Adam Witney
  • [Bioperl-l] create Bio::AlignIO object from hash   Roy Chaudhuri
    • [Bioperl-l] create Bio::AlignIO object from hash   Roy Chaudhuri
      • [Bioperl-l] create Bio::AlignIO object from hash   Adam Witney
      • [Bioperl-l] BioPerl version?   Smithies, Russell
      • [Bioperl-l] BioPerl version?   Chris Fields
      • [Bioperl-l] create Bio::AlignIO object from hash   Roy Chaudhuri
• [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Peter
  • [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Mark A. Jensen
    • [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Peter
      • [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Chris Fields
  • [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Chris Fields
  • [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Hotz, Hans-Rudolf
    • [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Peter
      • [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Chris Fields
      • [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records   Peter
• [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP web service   Mark A. Jensen
  • [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP web service   Chris Fields
    • [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP web service   Mark A. Jensen
      • [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP web service   Chris Fields
      • [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP webservice   Mark A. Jensen
• [Bioperl-l] code.open-bio.org timing out?   Sheldon McKay
  • [Bioperl-l] code.open-bio.org timing out?   Peter
    • [Bioperl-l] code.open-bio.org timing out?   Chris Fields
      • [Bioperl-l] code.open-bio.org timing out?   Jason Stajich
• [Bioperl-l] Parsing PSI-BLAST results with SearchIO   NickJD
• [Bioperl-l] Bioinformatician position - Waksman Institute   David J Sidote
• [Bioperl-l] Blast to Clustalw Format   Marcelo Iwata
  • [Bioperl-l] Blast to Clustalw Format   Mark A. Jensen
    • [Bioperl-l] Blast to Clustalw Format   Marcelo Iwata
      • [Bioperl-l] Blast to Clustalw Format   Marcelo Iwata
      • [Bioperl-l] Blast to Clustalw Format   Mark A. Jensen
• [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges   albezg
  • [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges   Jason Stajich
    • [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges   Alexandr Bezginov
      • [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges   Jason Stajich
      • [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges   Chris Fields
• [Bioperl-l] not able to use Bio::Root::IO method   Dan Kortschak
  • [Bioperl-l] not able to use Bio::Root::IO method   Mark A. Jensen
    • [Bioperl-l] not able to use Bio::Root::IO method   Dan Kortschak
      • [Bioperl-l] not able to use Bio::Root::IO method   Chris Fields
      • [Bioperl-l] not able to use Bio::Root::IO method   Dan Kortschak
• [Bioperl-l] not able to use Bio::Root::IO method   Dan Kortschak
  • [Bioperl-l] not able to use Bio::Root::IO method   Mark A. Jensen
• [Bioperl-l] Fw: not able to use Bio::Root::IO method   Mark A. Jensen
  • [Bioperl-l] Fw: not able to use Bio::Root::IO method   Chris Fields
• [Bioperl-l] reading blast report   Siddhartha Basu
  • [Bioperl-l] reading blast report   Jason Stajich
    • [Bioperl-l] Re: reading blast report   Siddhartha Basu
      • [Bioperl-l] reading blast report   Jason Stajich
      • [Bioperl-l] Re: reading blast report   Siddhartha Basu
      • [Bioperl-l] reading blast report   Chris Fields
• [Bioperl-l] filter_by_location in Bio::DB::SeqFeature::Store::memory   Mitch Skinner
  • [Bioperl-l] filter_by_location in Bio::DB::SeqFeature::Store::memory   Christopher Fields
• [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes   Scott Markel
  • [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes   Mark A. Jensen
  • [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes   Chris Fields
    • [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes   Mark A. Jensen
    • [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes   Scott Markel
      • [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes   Mark A. Jensen
      • [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes   Scott Markel
• [Bioperl-l] getting/setting species names with Bio::Species   Dave Messina
  • [Bioperl-l] getting/setting species names with Bio::Species   Mark A. Jensen
    • [Bioperl-l] getting/setting species names with Bio::Species   Chris Fields
      • [Bioperl-l] getting/setting species names with Bio::Species   Mark A. Jensen
  • [Bioperl-l] getting/setting species names with Bio::Species   Hilmar Lapp
    • [Bioperl-l] getting/setting species names with Bio::Species   Dave Messina
• [Bioperl-l] Reciprocal best hits using Bioperl?   Bhakti Dwivedi
  • [Bioperl-l] Reciprocal best hits using Bioperl?   Chris Fields
  • [Bioperl-l] Reciprocal best hits using Bioperl?   Mark A. Jensen
    • [Bioperl-l] Reciprocal best hits using Bioperl?   Bhakti Dwivedi
      • [Bioperl-l] Reciprocal best hits using Bioperl?   Chris Fields
      • [Bioperl-l] Reciprocal best hits using Bioperl?   Tristan Lefebure
      • [Bioperl-l] Reciprocal best hits using Bioperl?   Jason Stajich
      • [Bioperl-l] Reciprocal best hits using Bioperl?   Tristan Lefebure
      • [Bioperl-l] Reciprocal best hits using Bioperl?   Robert Bradbury
      • [Bioperl-l] Reciprocal best hits using Bioperl?   Chris Fields
      • [Bioperl-l] Reciprocal best hits using Bioperl?   Jason Stajich
  • [Bioperl-l] Reciprocal best hits using Bioperl?   Jay Hannah
• [Bioperl-l] Bioperl 1.6   Guohong Hu
  • [Bioperl-l] Bioperl 1.6   Chris Fields
    • [Bioperl-l] Bioperl 1.6   Mark A. Jensen
      • [Bioperl-l] Bioperl 1.6   Chris Fields
      • [Bioperl-l] Bioperl 1.6   Mark A. Jensen
    • [Bioperl-l] Bioperl 1.6   Guohong Hu
      • [Bioperl-l] Bioperl 1.6   Chris Fields
• [Bioperl-l] Reciprocal best blast hits using BioPerl?   Chris Larsen
• [Bioperl-l] Bio::BroodComb - RFC   Jay Hannah
  • [Bioperl-l] Bio::BroodComb - RFC   Chris Fields
    • [Bioperl-l] Bio::BroodComb - RFC   Jay Hannah
• [Bioperl-l] installing bioperl for mac   Omar Cornejo
  • [Bioperl-l] installing bioperl for mac   Chris Fields
    • [Bioperl-l] installing bioperl for mac   Scott Cain
      • [Bioperl-l] installing bioperl for mac   Chris Fields
      • [Bioperl-l] installing bioperl for mac   Omar Eduardo Cornejo Ordaz
• [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA   Dan Kortschak
  • [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA   Mark A. Jensen
  • [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA   Chris Fields
  • [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA   Scott Markel
    • [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA   Dan Kortschak
• [Bioperl-l] DAS Workshop Registrations now Open (workshop date 7-9 April 2010)   Jonathan Warren
• [Bioperl-l] using Bio::DB::GFF for aggregation   Dan Kortschak
  • [Bioperl-l] using Bio::DB::GFF for aggregation   Jason Stajich
    • [Bioperl-l] using Bio::DB::GFF for aggregation   Dan Kortschak
  • [Bioperl-l] using Bio::DB::GFF for aggregation   Aaron Mackey
    • [Bioperl-l] using Bio::DB::GFF for aggregation   Dan Kortschak
• [Bioperl-l] SwissProt DE lines and UniProt XML / TagTree as XML in BioSQL   Peter
  • [Bioperl-l] [Open-bio-l] SwissProt DE lines and UniProt XML / TagTree as XML in BioSQL   Chris Fields
  • [Bioperl-l] [BioSQL-l] SwissProt DE lines and UniProt XML / TagTree as XML in BioSQL   Richard Holland
  • [Bioperl-l] SwissProt DE lines and UniProt XML / TagTree as XML in BioSQL   Andrea Pierleoni
• [Bioperl-l] sequence orientation   shalu sharma
• [Bioperl-l] Regarding blast in Bioperl   Roopa Raghuveer
  • [Bioperl-l] Regarding blast in Bioperl   Bernd Web
  • [Bioperl-l] Fwd: Regarding blast in Bioperl   Roopa Raghuveer
• [Bioperl-l] forcing alphabet in Bio::AlignIO   Jason Stajich
  • [Bioperl-l] forcing alphabet in Bio::AlignIO   Mark A. Jensen
  • [Bioperl-l] forcing alphabet in Bio::AlignIO   Chris Fields
    • [Bioperl-l] forcing alphabet in Bio::AlignIO   Jason Stajich
• [Bioperl-l] Merging fragments in a simplealign   Albert Vilella
  • [Bioperl-l] Merging fragments in a simplealign   Mark A. Jensen
    • [Bioperl-l] Merging fragments in a simplealign   Chris Fields
      • [Bioperl-l] Merging fragments in a simplealign   Mark A. Jensen
      • [Bioperl-l] Merging fragments in a simplealign   Albert Vilella
      • [Bioperl-l] Merging fragments in a simplealign   Albert Vilella
      • [Bioperl-l] Merging fragments in a simplealign   Chris Fields
      • [Bioperl-l] Merging fragments in a simplealign   Mark A. Jensen
• [Bioperl-l] Bioperl installation failed   hina dalal
• [Bioperl-l] BioPerl installation failed: please help   Hina Dalal
  • [Bioperl-l] BioPerl installation failed: please help   Mark A. Jensen
• [Bioperl-l] BioPerl installation failed: please help   Mark A. Jensen
• [Bioperl-l] Transcribe in bioperl   Peng Yu
  • [Bioperl-l] Transcribe in bioperl   Jason Stajich
    • [Bioperl-l] Transcribe in bioperl   Peng Yu
      • [Bioperl-l] Transcribe in bioperl   Mark A. Jensen
      • [Bioperl-l] Transcribe in bioperl   Chris Fields
      • [Bioperl-l] Transcribe in bioperl   Chris Fields
      • [Bioperl-l] Transcribe in bioperl   Mark A. Jensen
• [Bioperl-l] how to retrieve accession number by taxon id??   JY
• [Bioperl-l] BEDTools module   Dan Kortschak
  • [Bioperl-l] BEDTools module   Chris Fields
  • [Bioperl-l] BEDTools module   Mark A. Jensen
• [Bioperl-l] Distance between non-overlapping sequences in DNAStatistics   Chris Fields
  • [Bioperl-l] Distance between non-overlapping sequences in DNAStatistics   Jason Stajich
    • [Bioperl-l] Distance between non-overlapping sequences in DNAStatistics   Chris Fields
• [Bioperl-l] Regarding blast in Bioperl   Roopa Raghuveer
  • [Bioperl-l] Regarding blast in Bioperl   Smithies, Russell
    • [Bioperl-l] Regarding blast in Bioperl   Roopa Raghuveer
• [Bioperl-l] remote blast bioperl   Roopa Raghuveer
  • [Bioperl-l] remote blast bioperl   Chris Fields
• [Bioperl-l] HTMLResultWriter   Lorenzo Carretero-Paulet
  • [Bioperl-l] HTMLResultWriter   Dave Messina
    • [Bioperl-l] HTMLResultWriter   lpaulet at ual.es
• [Bioperl-l] HTMLResultWriter   lpaulet at ual.es
  • [Bioperl-l] HTMLResultWriter   Mark A. Jensen
• [Bioperl-l] Transcribe in bioperl   Dan Kortschak
  • [Bioperl-l] Transcribe in bioperl   Mark A. Jensen
  • [Bioperl-l] Transcribe in bioperl   Peter
    • [Bioperl-l] Transcribe in bioperl   Jason Stajich
    • [Bioperl-l] Transcribe in bioperl   Dan Kortschak
      • [Bioperl-l] Transcribe in bioperl   Aaron Mackey
• [Bioperl-l] SVN access   Nathan Liles
• [Bioperl-l] Designing primers from multiple sequence alignment of amino acid sequences   Bhakti Dwivedi
  • [Bioperl-l] Designing primers from multiple sequence alignment ofamino acid sequences   Kevin Brown
• [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn   mike stubbington (BI)
  • [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn   Mark A. Jensen
    • [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn   mike stubbington (BI)
      • [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn   Mark A. Jensen
      • [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn   Mark A. Jensen
      • [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn   mike stubbington (BI)
      • [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn   Mark A. Jensen
      • [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn   Mark A. Jensen
• [Bioperl-l] EUtilities policy change   Chris Fields
  • [Bioperl-l] EUtilities policy change   Mark A. Jensen
    • [Bioperl-l] EUtilities policy change   Chris Fields
      • [Bioperl-l] EUtilities policy change   Mark A. Jensen
• [Bioperl-l] OpenBio solution challenge: Project updates at BOSC 2010   Brad Chapman
  • [Bioperl-l] [MOBY-dev] OpenBio solution challenge: Project updates at BOSC 2010   Mark Wilkinson
    • [Bioperl-l] [Biojava-dev] [MOBY-dev] OpenBio solution challenge: Project updates at BOSC 2010   Scooter Willis
    • [Bioperl-l] [MOBY-dev] OpenBio solution challenge: Project updates at BOSC 2010   Peter
• [Bioperl-l] 2010 GMOD Summer School - Americas   Dave Clements, GMOD Help Desk
• [Bioperl-l] how to map blast results on to the genome?   Bhakti Dwivedi
  • [Bioperl-l] how to map blast results on to the genome?   Jason Stajich
• [Bioperl-l] question about a PAML module   Rui Faria
  • [Bioperl-l] question about a PAML module   Dave Messina
    • [Bioperl-l] question about a PAML module   Rui Faria
• [Bioperl-l] New package to compare two SeqI-implementing objects   Daniel Renfro
  • [Bioperl-l] New package to compare two SeqI-implementing objects   Mark A. Jensen

Last message date: Mon Feb 1 03:47:05 UTC 2010
Archived on: Mon Jun 16 02:50:24 UTC 2014

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