[Bioperl-l] Reciprocal best hits using Bioperl?
Chris Fields
cjfields at illinois.edu
Sun Jan 17 22:00:02 UTC 2010
OrthoMCL has updated to v2 and no longer uses BioPerl, just plain perl. Database is available here:
http://orthomcl.org/cgi-bin/OrthoMclWeb.cgi
Package (you'll need a few other things to get it working):
http://orthomcl.org/common/downloads/software/
chris
On Jan 17, 2010, at 3:10 PM, Bhakti Dwivedi wrote:
> Thank you!
>
>
> On Sun, Jan 17, 2010 at 4:03 PM, Mark A. Jensen <maj at fortinbras.us> wrote:
>
>> re Chris's answer, check out this archived post:
>> http://bioperl.org/pipermail/bioperl-l/2008-March/027357.html
>> cheers MAJ
>> ----- Original Message ----- From: "Bhakti Dwivedi" <
>> bhakti.dwivedi at gmail.com>
>> To: <bioperl-l at lists.open-bio.org>
>> Sent: Sunday, January 17, 2010 11:02 AM
>> Subject: [Bioperl-l] Reciprocal best hits using Bioperl?
>>
>>
>> Hi
>>>
>>> Is there a Bio-perl module to parse the reciprocal best hits (query1->
>>> hit1
>>> && hit1 -> query1) from a blast table report?
>>>
>>> Thanks
>>>
>>> BD
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>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
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>>>
>>>
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