January 2010 Archives by subject
Starting: Sat Jan 2 08:57:28 UTC 2010
Ending: Mon Feb 1 03:47:05 UTC 2010
Messages: 228
- [Bioperl-l] 2010 GMOD Summer School - Americas
Dave Clements, GMOD Help Desk
- [Bioperl-l] [Biojava-dev] [MOBY-dev] OpenBio solution challenge: Project updates at BOSC 2010
Scooter Willis
- [Bioperl-l] [BioSQL-l] SwissProt DE lines and UniProt XML / TagTree as XML in BioSQL
Richard Holland
- [Bioperl-l] [MOBY-dev] OpenBio solution challenge: Project updates at BOSC 2010
Peter
- [Bioperl-l] [MOBY-dev] OpenBio solution challenge: Project updates at BOSC 2010
Mark Wilkinson
- [Bioperl-l] [Open-bio-l] SwissProt DE lines and UniProt XML / TagTree as XML in BioSQL
Chris Fields
- [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges
Jason Stajich
- [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges
Jason Stajich
- [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges
Chris Fields
- [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges
albezg
- [Bioperl-l] AlignIO crashes when reading stockholm alignment with negative PDB ranges
Alexandr Bezginov
- [Bioperl-l] BEDTools module
Dan Kortschak
- [Bioperl-l] BEDTools module
Chris Fields
- [Bioperl-l] BEDTools module
Mark A. Jensen
- [Bioperl-l] Bio::BroodComb - RFC
Jay Hannah
- [Bioperl-l] Bio::BroodComb - RFC
Chris Fields
- [Bioperl-l] Bio::BroodComb - RFC
Jay Hannah
- [Bioperl-l] Bio::DB::Sam strange behaviour for read pairs
Frank Schwach
- [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP webservice
Mark A. Jensen
- [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP web service
Mark A. Jensen
- [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP web service
Chris Fields
- [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP web service
Mark A. Jensen
- [Bioperl-l] Bio::DB::SoapEUtilities : access to Entrez SOAP web service
Chris Fields
- [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA
Chris Fields
- [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA
Dan Kortschak
- [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA
Scott Markel
- [Bioperl-l] Bio::Tools::Run::Bowtie and Bio::Assembly::IO::bowtie now available BETA
Dan Kortschak
- [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes
Scott Markel
- [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes
Chris Fields
- [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes
Scott Markel
- [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::RemoteBlast return codes
Scott Markel
- [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn
Mark A. Jensen
- [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn
mike stubbington (BI)
- [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn
mike stubbington (BI)
- [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus - Illegal seek error running blastn
mike stubbington (BI)
- [Bioperl-l] Bio:DB:SeqFeature - MySql - Java
Bernd Jagla
- [Bioperl-l] Bio:DB:SeqFeature - MySql - Java
Peter
- [Bioperl-l] Bio:DB:SeqFeature - MySql - Java
Bernd Jagla
- [Bioperl-l] Bioinformatician position - Waksman Institute
David J Sidote
- [Bioperl-l] Bioperl 1.6
Guohong Hu
- [Bioperl-l] Bioperl 1.6
Chris Fields
- [Bioperl-l] Bioperl 1.6
Mark A. Jensen
- [Bioperl-l] Bioperl 1.6
Chris Fields
- [Bioperl-l] Bioperl 1.6
Mark A. Jensen
- [Bioperl-l] Bioperl 1.6
Guohong Hu
- [Bioperl-l] Bioperl 1.6
Chris Fields
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Peter
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Mark A. Jensen
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Peter
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Chris Fields
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Chris Fields
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Hotz, Hans-Rudolf
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Peter
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Chris Fields
- [Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
Peter
- [Bioperl-l] Bioperl installation failed
hina dalal
- [Bioperl-l] BioPerl installation failed: please help
Hina Dalal
- [Bioperl-l] BioPerl installation failed: please help
Mark A. Jensen
- [Bioperl-l] BioPerl installation failed: please help
Mark A. Jensen
- [Bioperl-l] BioPerl version?
Smithies, Russell
- [Bioperl-l] BioPerl version?
Chris Fields
- [Bioperl-l] Blast to Clustalw Format
Marcelo Iwata
- [Bioperl-l] Blast to Clustalw Format
Mark A. Jensen
- [Bioperl-l] Blast to Clustalw Format
Marcelo Iwata
- [Bioperl-l] Blast to Clustalw Format
Marcelo Iwata
- [Bioperl-l] Blast to Clustalw Format
Mark A. Jensen
- [Bioperl-l] Cladogram construction
Julian Onions
- [Bioperl-l] code.open-bio.org timing out?
Sheldon McKay
- [Bioperl-l] code.open-bio.org timing out?
Peter
- [Bioperl-l] code.open-bio.org timing out?
Chris Fields
- [Bioperl-l] code.open-bio.org timing out?
Jason Stajich
- [Bioperl-l] create Bio::AlignIO object from hash
Adam Witney
- [Bioperl-l] create Bio::AlignIO object from hash
Roy Chaudhuri
- [Bioperl-l] create Bio::AlignIO object from hash
Roy Chaudhuri
- [Bioperl-l] create Bio::AlignIO object from hash
Adam Witney
- [Bioperl-l] create Bio::AlignIO object from hash
Roy Chaudhuri
- [Bioperl-l] DAS Workshop Registrations now Open (workshop date 7-9 April 2010)
Jonathan Warren
- [Bioperl-l] Data missing into Annotation object using Bio::SeqIO (Genbank)
Hilmar Lapp
- [Bioperl-l] Designing primers from multiple sequence alignment ofamino acid sequences
Kevin Brown
- [Bioperl-l] Designing primers from multiple sequence alignment of amino acid sequences
Bhakti Dwivedi
- [Bioperl-l] Distance between non-overlapping sequences in DNAStatistics
Chris Fields
- [Bioperl-l] Distance between non-overlapping sequences in DNAStatistics
Jason Stajich
- [Bioperl-l] Distance between non-overlapping sequences in DNAStatistics
Chris Fields
- [Bioperl-l] Downloading from dbEST by taxon range
Albert Vilella
- [Bioperl-l] Downloading from dbEST by taxon range
Jason Stajich
- [Bioperl-l] Downloading from dbEST by taxon range
Albert Vilella
- [Bioperl-l] Ensembl problems
Robert Bradbury
- [Bioperl-l] Ensembl problems
Chris Fields
- [Bioperl-l] Ensembl problems
Andreas Kähäri
- [Bioperl-l] Ensembl problems
Robert Bradbury
- [Bioperl-l] Ensembl problems
Albert Vilella
- [Bioperl-l] EUtilities policy change
Chris Fields
- [Bioperl-l] EUtilities policy change
Mark A. Jensen
- [Bioperl-l] EUtilities policy change
Chris Fields
- [Bioperl-l] EUtilities policy change
Mark A. Jensen
- [Bioperl-l] filter_by_location in Bio::DB::SeqFeature::Store::memory
Christopher Fields
- [Bioperl-l] filter_by_location in Bio::DB::SeqFeature::Store::memory
Mitch Skinner
- [Bioperl-l] forcing alphabet in Bio::AlignIO
Jason Stajich
- [Bioperl-l] forcing alphabet in Bio::AlignIO
Mark A. Jensen
- [Bioperl-l] forcing alphabet in Bio::AlignIO
Chris Fields
- [Bioperl-l] forcing alphabet in Bio::AlignIO
Jason Stajich
- [Bioperl-l] Fw: not able to use Bio::Root::IO method
Mark A. Jensen
- [Bioperl-l] Fw: not able to use Bio::Root::IO method
Chris Fields
- [Bioperl-l] Fwd: Regarding blast in Bioperl
Roopa Raghuveer
- [Bioperl-l] GBrowse.org project
Alessandra
- [Bioperl-l] getting/setting species names with Bio::Species
Dave Messina
- [Bioperl-l] getting/setting species names with Bio::Species
Mark A. Jensen
- [Bioperl-l] getting/setting species names with Bio::Species
Chris Fields
- [Bioperl-l] getting/setting species names with Bio::Species
Mark A. Jensen
- [Bioperl-l] getting/setting species names with Bio::Species
Hilmar Lapp
- [Bioperl-l] getting/setting species names with Bio::Species
Dave Messina
- [Bioperl-l] GMOD BioPerl Meeting
Chris Fields
- [Bioperl-l] how to map blast results on to the genome?
Bhakti Dwivedi
- [Bioperl-l] how to map blast results on to the genome?
Jason Stajich
- [Bioperl-l] How to read in the whole fasta file in the memory?
Jean-Marc Frigerio INRA
- [Bioperl-l] How to read in the whole fasta file in the memory?
Jason Stajich
- [Bioperl-l] How to read in the whole fasta file in the memory?
Chris Fields
- [Bioperl-l] how to retrieve accession number by taxon id??
JY
- [Bioperl-l] how to retrieve organism name from accession number?
Smithies, Russell
- [Bioperl-l] how to retrieve organism name from accession number?
Chris Fields
- [Bioperl-l] how to retrieve organism name from accession number?
Smithies, Russell
- [Bioperl-l] how to retrieve organism name from accession number?
Smithies, Russell
- [Bioperl-l] how to retrieve organism name from accession number?
Chris Fields
- [Bioperl-l] how to retrieve organism name from accession number?
Smithies, Russell
- [Bioperl-l] how to retrieve organism name from accession number?
Chris Fields
- [Bioperl-l] how to retrieve organism name from accession number?
Smithies, Russell
- [Bioperl-l] how to retrieve organism name from accession number?
Mark A. Jensen
- [Bioperl-l] how to retrieve organism name from accession number?
Chris Fields
- [Bioperl-l] how to retrieve organism name from accession number?
Smithies, Russell
- [Bioperl-l] how to retrieve organism name from accession number?
Chris Fields
- [Bioperl-l] HTMLResultWriter
Lorenzo Carretero-Paulet
- [Bioperl-l] HTMLResultWriter
lpaulet at ual.es
- [Bioperl-l] HTMLResultWriter
Mark A. Jensen
- [Bioperl-l] HTMLResultWriter
Dave Messina
- [Bioperl-l] HTMLResultWriter
lpaulet at ual.es
- [Bioperl-l] indexed fastq files
Albert Vilella
- [Bioperl-l] indexed fastq files
Chris Fields
- [Bioperl-l] installing bioperl for mac
Omar Cornejo
- [Bioperl-l] installing bioperl for mac
Chris Fields
- [Bioperl-l] installing bioperl for mac
Scott Cain
- [Bioperl-l] installing bioperl for mac
Chris Fields
- [Bioperl-l] installing bioperl for mac
Omar Eduardo Cornejo Ordaz
- [Bioperl-l] Merging fragments in a simplealign
Albert Vilella
- [Bioperl-l] Merging fragments in a simplealign
Mark A. Jensen
- [Bioperl-l] Merging fragments in a simplealign
Chris Fields
- [Bioperl-l] Merging fragments in a simplealign
Mark A. Jensen
- [Bioperl-l] Merging fragments in a simplealign
Albert Vilella
- [Bioperl-l] Merging fragments in a simplealign
Albert Vilella
- [Bioperl-l] Merging fragments in a simplealign
Chris Fields
- [Bioperl-l] Merging fragments in a simplealign
Mark A. Jensen
- [Bioperl-l] New package to compare two SeqI-implementing objects
Daniel Renfro
- [Bioperl-l] New package to compare two SeqI-implementing objects
Mark A. Jensen
- [Bioperl-l] not able to use Bio::Root::IO method
Dan Kortschak
- [Bioperl-l] not able to use Bio::Root::IO method
Mark A. Jensen
- [Bioperl-l] not able to use Bio::Root::IO method
Dan Kortschak
- [Bioperl-l] not able to use Bio::Root::IO method
Dan Kortschak
- [Bioperl-l] not able to use Bio::Root::IO method
Mark A. Jensen
- [Bioperl-l] not able to use Bio::Root::IO method
Chris Fields
- [Bioperl-l] not able to use Bio::Root::IO method
Dan Kortschak
- [Bioperl-l] OpenBio solution challenge: Project updates at BOSC 2010
Brad Chapman
- [Bioperl-l] Parsing PSI-BLAST results with SearchIO
NickJD
- [Bioperl-l] question about a PAML module
Rui Faria
- [Bioperl-l] question about a PAML module
Dave Messina
- [Bioperl-l] question about a PAML module
Rui Faria
- [Bioperl-l] reading blast report
Siddhartha Basu
- [Bioperl-l] reading blast report
Jason Stajich
- [Bioperl-l] Re: reading blast report
Siddhartha Basu
- [Bioperl-l] reading blast report
Jason Stajich
- [Bioperl-l] Re: reading blast report
Siddhartha Basu
- [Bioperl-l] reading blast report
Chris Fields
- [Bioperl-l] Reciprocal best blast hits using BioPerl?
Chris Larsen
- [Bioperl-l] Reciprocal best hits using Bioperl?
Bhakti Dwivedi
- [Bioperl-l] Reciprocal best hits using Bioperl?
Chris Fields
- [Bioperl-l] Reciprocal best hits using Bioperl?
Mark A. Jensen
- [Bioperl-l] Reciprocal best hits using Bioperl?
Bhakti Dwivedi
- [Bioperl-l] Reciprocal best hits using Bioperl?
Chris Fields
- [Bioperl-l] Reciprocal best hits using Bioperl?
Tristan Lefebure
- [Bioperl-l] Reciprocal best hits using Bioperl?
Jason Stajich
- [Bioperl-l] Reciprocal best hits using Bioperl?
Tristan Lefebure
- [Bioperl-l] Reciprocal best hits using Bioperl?
Robert Bradbury
- [Bioperl-l] Reciprocal best hits using Bioperl?
Chris Fields
- [Bioperl-l] Reciprocal best hits using Bioperl?
Jason Stajich
- [Bioperl-l] Reciprocal best hits using Bioperl?
Jay Hannah
- [Bioperl-l] Regarding blast in Bioperl
Roopa Raghuveer
- [Bioperl-l] Regarding blast in Bioperl
Mark A. Jensen
- [Bioperl-l] Regarding blast in Bioperl
Roopa Raghuveer
- [Bioperl-l] Regarding blast in Bioperl
Mark A. Jensen
- [Bioperl-l] Regarding blast in Bioperl
Robert Bradbury
- [Bioperl-l] Regarding blast in Bioperl
Roopa Raghuveer
- [Bioperl-l] Regarding blast in Bioperl
Bernd Web
- [Bioperl-l] Regarding blast in Bioperl
Roopa Raghuveer
- [Bioperl-l] Regarding blast in Bioperl
Smithies, Russell
- [Bioperl-l] Regarding blast in Bioperl
Roopa Raghuveer
- [Bioperl-l] remote blast bioperl
Roopa Raghuveer
- [Bioperl-l] remote blast bioperl
Chris Fields
- [Bioperl-l] sequence orientation
shalu sharma
- [Bioperl-l] SVN access
Nathan Liles
- [Bioperl-l] SwissProt DE lines and UniProt XML / TagTree as XML in BioSQL
Andrea Pierleoni
- [Bioperl-l] SwissProt DE lines and UniProt XML / TagTree as XML in BioSQL
Peter
- [Bioperl-l] targetp request
Vijayaraj Nagarajan
- [Bioperl-l] targetp request
Emmanuel Quevillon
- [Bioperl-l] targetp request
Kevin Brown
- [Bioperl-l] Transcribe in bioperl
Peng Yu
- [Bioperl-l] Transcribe in bioperl
Jason Stajich
- [Bioperl-l] Transcribe in bioperl
Peng Yu
- [Bioperl-l] Transcribe in bioperl
Mark A. Jensen
- [Bioperl-l] Transcribe in bioperl
Chris Fields
- [Bioperl-l] Transcribe in bioperl
Chris Fields
- [Bioperl-l] Transcribe in bioperl
Mark A. Jensen
- [Bioperl-l] Transcribe in bioperl
Dan Kortschak
- [Bioperl-l] Transcribe in bioperl
Mark A. Jensen
- [Bioperl-l] Transcribe in bioperl
Peter
- [Bioperl-l] Transcribe in bioperl
Jason Stajich
- [Bioperl-l] Transcribe in bioperl
Dan Kortschak
- [Bioperl-l] Transcribe in bioperl
Aaron Mackey
- [Bioperl-l] using Bio::DB::GFF for aggregation
Dan Kortschak
- [Bioperl-l] using Bio::DB::GFF for aggregation
Jason Stajich
- [Bioperl-l] using Bio::DB::GFF for aggregation
Dan Kortschak
- [Bioperl-l] using Bio::DB::GFF for aggregation
Aaron Mackey
- [Bioperl-l] using Bio::DB::GFF for aggregation
Dan Kortschak
Last message date:
Mon Feb 1 03:47:05 UTC 2010
Archived on: Mon Jun 16 02:50:24 UTC 2014
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