May 2008 Archives by thread

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Starting: Tue May 6 05:32:53 EDT 2008
Ending: Sat May 31 17:53:34 EDT 2008
Messages: 139

• [Bioperl-l] BioPerl and NHX tree   Laurence Amilhat
• [Bioperl-l] HMMER - Parse hmmpfam output using bioperl - help!!   K. Shameer
  • [Bioperl-l] HMMER - Parse hmmpfam output using bioperl - help!!   Sendu Bala
• [Bioperl-l] HMMER - Parse hmmpfam output using bioperl - help!!   K. Shameer
  • [Bioperl-l] HMMER - Parse hmmpfam output using bioperl - help!!   Sendu Bala
• [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Prachi Shah
  • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Jason Stajich
    • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Prachi Shah
      • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Chris Fields
      • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Prachi Shah
      • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Prachi Shah
      • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Jason Stajich
      • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Prachi Shah
      • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Jason Stajich
      • [Bioperl-l] Can't parse blast report written by Bio::SearchIO::Writer::TextResultWriter   Chris Fields
• [Bioperl-l] help_to_acces_clustal-w   punit kumar
  • [Bioperl-l] help_to_acces_clustal-w   Dave Messina
• [Bioperl-l] problems with clustalw   nisa_dar
  • [Bioperl-l] problems with clustalw   Sendu Bala
• [Bioperl-l] problems with clustalw   Sendu Bala
  • [Bioperl-l] problems with clustalw   vdar at yorku.ca
• [Bioperl-l] problems with clustalw   Sendu Bala
  • [Bioperl-l] problems with clustalw   vdar at yorku.ca
    • [Bioperl-l] problems with clustalw   Sendu Bala
      • [Bioperl-l] problems with clustalw   vdar at yorku.ca
• [Bioperl-l] automated stand alone blast with repeat masker   nisa_dar
  • [Bioperl-l] automated stand alone blast with repeat masker   Dave Messina
    • [Bioperl-l] automated stand alone blast with repeat masker   vdar at yorku.ca
      • [Bioperl-l] automated stand alone blast with repeat masker   Dave Messina
    • [Bioperl-l] automated stand alone blast with repeat masker   vdar at yorku.ca
• [Bioperl-l] help_to_acces_clustal-w   Dave Messina
• [Bioperl-l] [Gmod-gbrowse] Script to convert blastall output into gff format.   Jay Hannah
• [Bioperl-l] MSA manipulation   Jason Stajich
• [Bioperl-l] Re peatMasker not found   nisa_dar
  • [Bioperl-l] Re peatMasker not found   Jason Stajich
    • [Bioperl-l] Re peatMasker not found   nisa_dar
      • [Bioperl-l] RepeatMasker not found   Sendu Bala
      • [Bioperl-l] Re peatMasker not found   nisa_dar
      • [Bioperl-l] Re peatMasker not found   Florent Angly
      • [Bioperl-l] Re peatMasker not found   Mauricio Herrera Cuadra
      • [Bioperl-l] Re peatMasker not found   nisa_dar
      • [Bioperl-l] Re peatMasker not found   Sendu Bala
      • [Bioperl-l] Re peatMasker not found   nisa_dar
      • [Bioperl-l] Re peatMasker not found   Smithies, Russell
      • [Bioperl-l] Re peatMasker not found   vdar at yorku.ca
      • [Bioperl-l] Re peatMasker not found   Smithies, Russell
      • [Bioperl-l] Re peatMasker not found   Sendu Bala
• [Bioperl-l] bl2seq for many   Aparna Pallavajjala
  • [Bioperl-l] bl2seq for many   Chris Fields
    • [Bioperl-l] bl2seq for many   Aparna Pallavajjala
• [Bioperl-l] [BioPython] Parsing the pairwise alignments from the FASTA tool   Chris Fields
• [Bioperl-l] Question on extracting Molecular Weight fields from UniProt records   Anand Venkatraman
  • [Bioperl-l] Question on extracting Molecular Weight fields fromUniProt records   Marc Logghe
    • [Bioperl-l] Question on extracting Molecular Weight fields fromUniProt records   Chris Fields
• [Bioperl-l] Bio::Align::DNAStatistics   Jason Stajich
  • [Bioperl-l] Bio::Align::DNAStatistics   sbeckstrom at tgen.org
    • [Bioperl-l] Bio::Align::DNAStatistics   Mauricio Herrera Cuadra
• [Bioperl-l] give a BioPerl talk at BOSC!   Jason Stajich
• [Bioperl-l] Bio::Align::DNAStatistics   Mauricio Herrera Cuadra
• [Bioperl-l] SearchIO: write/read database   Chu, Roy
  • [Bioperl-l] SearchIO: write/read database   Sendu Bala
    • [Bioperl-l] SearchIO: write/read database   Dave Messina
      • [Bioperl-l] SearchIO: write/read database   Chu, Roy
      • [Bioperl-l] SearchIO: write/read database   Chris Fields
      • [Bioperl-l] SearchIO: write/read database   Chris Fields
  • [Bioperl-l] SearchIO: write/read database   Jason Stajich
• [Bioperl-l] How to extract list of SNPs for a given gene?   artendulkar at gmail.com
  • [Bioperl-l] How to extract list of SNPs for a given gene?   Jason Stajich
• [Bioperl-l] I can't access clustalw from my cgi perl program...   nisa_dar
  • [Bioperl-l] I can't access clustalw from my cgi perl program...   Thomas Sharpton
    • [Bioperl-l] I can't access clustalw from my cgi perl program...   vdar at yorku.ca
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   Mauricio Herrera Cuadra
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   vdar at yorku.ca
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   Sendu Bala
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   vdar at yorku.ca
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   Mauricio Herrera Cuadra
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   vdar at yorku.ca
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   Mauricio Herrera Cuadra
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   nisa_dar
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   Wei Zhou
      • [Bioperl-l] I can't access clustalw from my cgi perl program...   Chris Fields
  • [Bioperl-l] I can't access clustalw from my cgi perl program...   Dave Messina
    • [Bioperl-l] I can't access clustalw from my cgi perl program...   nisa_dar
• [Bioperl-l] quick question about Yn00.pm   Jason Stajich
• [Bioperl-l] FASTA format check   Zhi-Qiang Ye
  • [Bioperl-l] FASTA format check   Edward Wijaya
    • [Bioperl-l] FASTA format check   Zhi-Qiang Ye
  • [Bioperl-l] FASTA format check   Dave Messina
    • [Bioperl-l] FASTA format check   Sendu Bala
• [Bioperl-l] Re peatMasker not found   nisa_dar
  • [Bioperl-l] Re peatMasker not found   Thomas Sharpton
    • [Bioperl-l] Re peatMasker not found   vdar at yorku.ca
• [Bioperl-l] I can't access clustalw from my cgi perl program...   nisa_dar
• [Bioperl-l] WUBlastSearchEngine   nisa_dar
  • [Bioperl-l] WUBlastSearchEngine   nisa_dar
• [Bioperl-l] [rt.cpan.org #36117] Circular dependency   Serguei Trouchelle via RT
• [Bioperl-l] torsion angle   Giwrgos Tataetis
  • [Bioperl-l] torsion angle   Reece Hart
• [Bioperl-l] Fwd: about get_all_tags BioPerl method   Jason Stajich
  • [Bioperl-l] Fwd: about get_all_tags BioPerl method   Chris Fields
• [Bioperl-l] OT: Microarray analysis software - testers wanted   Mauricio Herrera Cuadra
• [Bioperl-l] Format Validator   arshad mohammed
• [Bioperl-l] How to find introns?   karchana at ibab.ac.in
• [Bioperl-l] torsion angles.   Giwrgos Tataetis
• [Bioperl-l] Get genes/annotations associated with a probe   Arkady
  • [Bioperl-l] Get genes/annotations associated with a probe   Jason Stajich
• [Bioperl-l] [rt.cpan.org #36117] Circular dependency   Sendu Bala via RT
• [Bioperl-l] [rt.cpan.org #29533] Bio::SeqIO::interpro depends on XML::DOM::XPath   Sendu Bala via RT
• [Bioperl-l] [rt.cpan.org #17505] fails to install   Sendu Bala via RT
• [Bioperl-l] Someone available to apply a documentation patch?   Sendu Bala
  • [Bioperl-l] Someone available to apply a documentation patch?   Chris Fields
  • [Bioperl-l] Someone available to apply a documentation patch?   Chris Fields
• [Bioperl-l] [rt.cpan.org #31796] SeqIO   Sendu Bala via RT
• [Bioperl-l] [rt.cpan.org #36216] Unable to parse score from BLAST output file   Kashi Revanna via RT
• [Bioperl-l] [rt.cpan.org #36216] Unable to parse score from BLAST output file   Chris Fields via RT
• [Bioperl-l] [rt.cpan.org #12802] Documentation patch   Sendu Bala via RT
• [Bioperl-l] Sort for get_all_tags method   Jason Stajich
  • [Bioperl-l] Sort for get_all_tags method   Chris Fields
• [Bioperl-l] extending the PHYLIP format   Heikki Lehvaslaiho
  • [Bioperl-l] extending the PHYLIP format   Albert Vilella
    • [Bioperl-l] extending the PHYLIP format   Martin MOKREJŠ
  • [Bioperl-l] extending the PHYLIP format   Chris Fields
    • [Bioperl-l] extending the PHYLIP format   Jason Stajich
      • [Bioperl-l] extending the PHYLIP format   Weigang Qiu
      • [Bioperl-l] extending the PHYLIP format   Heikki Lehvaslaiho
• [Bioperl-l] bioperl anonymous SVN checkout fails   Heikki Lehvaslaiho
• [Bioperl-l] Installation problem   calum robb
  • [Bioperl-l] Installation problem   Sendu Bala
• [Bioperl-l] bio-alignio-maf   dave burt (RI)
  • [Bioperl-l] bio-alignio-maf   Brian Osborne
    • [Bioperl-l] bio-alignio-maf   dave burt (RI)
      • [Bioperl-l] bio-alignio-maf   Chris Fields
• [Bioperl-l] Installation problem   Sendu Bala
• [Bioperl-l] Bio::SearchIO::megablast   Jason Stajich
• [Bioperl-l] Installation problem   Sendu Bala
  • [Bioperl-l] Installation problem   Scott Cain
• [Bioperl-l] Fwd: BPlite   Jason Stajich

Last message date: Sat May 31 17:53:34 EDT 2008
Archived on: Sat May 31 17:53:48 EDT 2008

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