[BioPython] problems to fetch pdb files from server using pdb_list
Florian Koelling
florian.koelling at tu-bs.de
Thu May 22 10:38:59 EDT 2008
Hi Folks!
I tried to download pdb files using pdb_list:
(the second variant didn't work as well:-@)
from Bio.PDB import*
pdbl=PDBList()
pdbl.retrieve_pdb_file('1FAT')
#pdbl.retrieve_pdb_file('1FAT', obsolete= compression='.Z',
uncompress='gunzip', pdir='/home/flo/Desktop')
I receive:
flo at AKB-12:~/Desktop/astex$ python test.py
Traceback (most recent call last):
File "test.py", line 10, in <module>
pdbl.retrieve_pdb_file('1FAT')
File "/var/lib/python-support/python2.5/Bio/PDB/PDBList.py", line 190,
in retrieve_pdb_file
os.mkdir(path)
OSError: [Errno 2] No such file or directory: '/pdb/fa'
What am I doing wrong?
Thanx for your Help!
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