[BioPython] AlignIO: Sequences of different length

[João Rodrigues]

Well... My VISTA partition just erased my Linux one, don't know how, so I
can't answer that right now :x As soon as I get linux again, as soon as I
get my script written again, I'll give an update here :) But I had solved
the problem by changing the alignment output format to markx10 and "parsing"
it my own way.

Cheers and thanks for the help :)

João Rodrigues
http://doeidoei.wordpress.com


On Fri, Dec 5, 2008 at 12:18 PM, Peter <biopython at maubp.freeserve.co.uk>wrote:

> On Fri, Dec 5, 2008 at 11:34 AM, João Rodrigues <anaryin at gmail.com> wrote:
> > I got a reply from the EBI support team saying that the webserver they
> > provide is outdated, when compared to the versions of NEEDLE we (me on
> the
> > web and Peter on his local machine) used. So, BioPython is nice and
> > up-to-date, it's their server that is quite outdated.
> >
> > " Actually the WSEmboss web service uses an older version of EMBOSS
> (2.9.0),
> > which exibits this behaviour. I suggest you contact the BioPython folks
> and let
> > them know that older versions of EMBOSS behave differently.
> >
> > If you want to use the latest version of EMBOSS I suggest looking at
> using
> > the Soaplab services (see
> http://www.ebi.ac.uk/Tools/webservices/soaplab/overview)
> > instead.
> >
> > All the best,
> >
> > Support at EBI"
> >
> > João Rodrigues
>
> Thanks the update :)
>
> Are you OK using the more up to date SOAP needle, or perhaps standalone
> needle?
>
> Does thos
>