[BioPython] AlignIO: Sequences of different length

[Peter]

On Fri, Dec 5, 2008 at 11:34 AM, João Rodrigues <anaryin at gmail.com> wrote:
> I got a reply from the EBI support team saying that the webserver they
> provide is outdated, when compared to the versions of NEEDLE we (me on the
> web and Peter on his local machine) used. So, BioPython is nice and
> up-to-date, it's their server that is quite outdated.
>
> " Actually the WSEmboss web service uses an older version of EMBOSS (2.9.0),
> which exibits this behaviour. I suggest you contact the BioPython folks and let
> them know that older versions of EMBOSS behave differently.
>
> If you want to use the latest version of EMBOSS I suggest looking at using
> the Soaplab services (see http://www.ebi.ac.uk/Tools/webservices/soaplab/overview)
> instead.
>
> All the best,
>
> Support at EBI"
>
> João Rodrigues

Thanks the update :)

Are you OK using the more up to date SOAP needle, or perhaps standalone needle?

Does thos