[BioPython] Installation issues

[Michiel Jan Laurens de Hoon]

One quick and dirty solution might be to set the environment variable 
C_INCLUDE_PATH to the location of the Numeric header files before running setup.py.

I'm a bit surprised though that the tweak for Bio.Cluster doesn't work for 
KDTree and Affy. What is the exact error message that you get?

--Michiel.

Hua Wong wrote:
> I compiled Biopython 1.30 from source on a Linux machine.
> 
> But I had to comment 2 out of 3 Numeric usingextensions because compiler can't find it.
> 
> Numeric is installed on a different location (non root... I know...my bad)
> How can I modify setup.py in order to make it find?
> 
> Already done a tweak for  Bio.Cluster (include_dirs...it works) 
> Tried to do it for KDTree and Affy but couldn't....
> 
> I would be glad to have some help...
> Thanks
> 
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-- 
Michiel de Hoon, Assistant Professor
University of Tokyo, Institute of Medical Science
Human Genome Center
4-6-1 Shirokane-dai, Minato-ku
Tokyo 108-8639
Japan
http://bonsai.ims.u-tokyo.ac.jp/~mdehoon