[BioPython] Re: about Prosite package
Jeffrey Chang
jchang at jeffchang.com
Fri Mar 14 20:48:58 EST 2003
Hi Olivier,
Thanks for the report. Which version of Biopython are you using? It
should have been fixed in Biopython 1.10. If you are using an earlier
version, please upgrade to the latest version. Or, at least, you
should upgrade the Bio/Prosite/__init__.py file.
Jeff
On Friday, March 14, 2003, at 05:47 AM, olivier amanatian wrote:
> Hello,
>
> I'm a poor Biopython beginner and I have met this
> problem:I wanted to get this Prosite pattern PS50893
> using the Prosite package and I get this error
>
> File"/local/lib/python2.2/site-packages/Bio/Prosite/__init__.py",
> line 599, in comment
> raise SyntaxError, "Unknown qual %s in comment
> line\n%s" % \
> SyntaxError: Unknown qual '/MATRIX_TYPE' in comment
> line
> CC /MATRIX_TYPE=protein_domain;
>
>
> Looking at the code of Prosite/__init__.py/class
> _RecordConsumer/def comment, I've seen that the
> comment
> "/MATRIX_TYPE" wasn't proposed.
>
> I hope this will help you to make Biopython more
> effective
>
> Cordially
>
> Olivier Amanatian
>
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