[BioPython] about Prosite package

olivier amanatian o_amanatian at yahoo.fr
Fri Mar 14 14:47:11 EST 2003


Hello,

I'm a poor Biopython beginner and I have met this
problem:I wanted to get this Prosite pattern  PS50893
using the Prosite package and I get this error

File"/local/lib/python2.2/site-packages/Bio/Prosite/__init__.py",
line 599, in comment
    raise SyntaxError, "Unknown qual %s in comment
line\n%s" % \
SyntaxError: Unknown qual '/MATRIX_TYPE' in comment
line
CC   /MATRIX_TYPE=protein_domain;


Looking at the code of Prosite/__init__.py/class
_RecordConsumer/def comment, I've seen that the
comment 
 "/MATRIX_TYPE" wasn't proposed.

I hope this will help you to make Biopython more
effective

Cordially

Olivier Amanatian

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