[Biopython-dev] [Biopython] Fw: Developing a wrapper for EBI dbfetch

[Peter Cock]

Thanks - we can wait :)

Peter

On Wed, Aug 16, 2017 at 12:34 AM, 有賀淳/Jun Aruga <happy at oh4u.net> wrote:
> Great,
> I want to comment this weekend, if it will have not been merged at that time
> yet.
>
> Jun
>
> On Tue, Aug 15, 2017 at 5:39 PM, Peter Cock <p.j.a.cock at googlemail.com>
> wrote:
>>
>> Would anyone like to comment on Francesco's pull request:
>>
>> https://github.com/biopython/biopython/pull/1298
>>
>> This is to add a wrapper for EBI's dbfetch, originally logged as:
>>
>> https://github.com/biopython/biopython/issues/443
>>
>> Thanks,
>>
>> Peter
>>
>> On Wed, Jun 21, 2017 at 12:06 PM, Peter Cock <p.j.a.cock at googlemail.com>
>> wrote:
>> > CC biopython-dev for the module naming in particular.
>> >
>> > General feedback or ideas about supporting the EBI's web-interface
>> > (their REST API, similar to the NCBI's Entrez utilities, or TogoWS)
>> > are welcome here or on the GitHub issue:
>> >
>> > https://github.com/biopython/biopython/issues/443
>> >
>> > Peter
>> >
>> > On Wed, Jun 21, 2017 at 11:25 AM, Francesco Gastaldello (Staff)
>> > <f.gastaldello at dundee.ac.uk> wrote:
>> >>
>> >> Hi all,
>> >>
>> >> this mail regard the development on my behalf for the dbfetch wrapper.
>> >> More info on the service are here:
>> >> http://www.ebi.ac.uk/Tools/dbfetch/dbfetch
>> >>
>> >> There is already an issue on the Biopython GitHub (#443) were me and
>> >> Peter Cock are discussing how to place the module when it's going to be
>> >> ready.
>> >>
>> >> He mentioned the possibility to place it in Bio/EBI/__init__.py, but
>> >> he's concened that this won't comply with PEP8 guidelines.
>> >>
>> >> Any thoughts about it?
>> >>
>> >> Regards,
>> >>
>> >> Francesco
>> >>
>> >> Dbfetch < EMBL-EBI
>> >> www.ebi.ac.uk
>> >> Dbfetch Help. What is dbfetch? Dbfetch is an abbreviation for "database
>> >> fetch". Dbfetch provides an easy way to retrieve entries from various
>> >> databases at the EMBL ...
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>
>
>
>
> --
> Jun Aruga
>