[Biopython-dev] [Biopython] Fw: Developing a wrapper for EBI dbfetch

[有賀淳/Jun Aruga]

Hi Peter,

Right now I commented. :)

Jun


On Wed, Aug 16, 2017 at 11:00 AM, Peter Cock <p.j.a.cock at googlemail.com>
wrote:

> Thanks - we can wait :)
>
> Peter
>
> On Wed, Aug 16, 2017 at 12:34 AM, 有賀淳/Jun Aruga <happy at oh4u.net> wrote:
> > Great,
> > I want to comment this weekend, if it will have not been merged at that
> time
> > yet.
> >
> > Jun
> >
> > On Tue, Aug 15, 2017 at 5:39 PM, Peter Cock <p.j.a.cock at googlemail.com>
> > wrote:
> >>
> >> Would anyone like to comment on Francesco's pull request:
> >>
> >> https://github.com/biopython/biopython/pull/1298
> >>
> >> This is to add a wrapper for EBI's dbfetch, originally logged as:
> >>
> >> https://github.com/biopython/biopython/issues/443
> >>
> >> Thanks,
> >>
> >> Peter
> >>
> >> On Wed, Jun 21, 2017 at 12:06 PM, Peter Cock <p.j.a.cock at googlemail.com
> >
> >> wrote:
> >> > CC biopython-dev for the module naming in particular.
> >> >
> >> > General feedback or ideas about supporting the EBI's web-interface
> >> > (their REST API, similar to the NCBI's Entrez utilities, or TogoWS)
> >> > are welcome here or on the GitHub issue:
> >> >
> >> > https://github.com/biopython/biopython/issues/443
> >> >
> >> > Peter
> >> >
> >> > On Wed, Jun 21, 2017 at 11:25 AM, Francesco Gastaldello (Staff)
> >> > <f.gastaldello at dundee.ac.uk> wrote:
> >> >>
> >> >> Hi all,
> >> >>
> >> >> this mail regard the development on my behalf for the dbfetch
> wrapper.
> >> >> More info on the service are here:
> >> >> http://www.ebi.ac.uk/Tools/dbfetch/dbfetch
> >> >>
> >> >> There is already an issue on the Biopython GitHub (#443) were me and
> >> >> Peter Cock are discussing how to place the module when it's going to
> be
> >> >> ready.
> >> >>
> >> >> He mentioned the possibility to place it in Bio/EBI/__init__.py, but
> >> >> he's concened that this won't comply with PEP8 guidelines.
> >> >>
> >> >> Any thoughts about it?
> >> >>
> >> >> Regards,
> >> >>
> >> >> Francesco
> >> >>
> >> >> Dbfetch < EMBL-EBI
> >> >> www.ebi.ac.uk
> >> >> Dbfetch Help. What is dbfetch? Dbfetch is an abbreviation for
> "database
> >> >> fetch". Dbfetch provides an easy way to retrieve entries from various
> >> >> databases at the EMBL ...
> >> _______________________________________________
> >> Biopython-dev mailing list
> >> Biopython-dev at mailman.open-bio.org
> >> http://mailman.open-bio.org/mailman/listinfo/biopython-dev
> >
> >
> >
> >
> > --
> > Jun Aruga
> >
>



-- 
Jun Aruga
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