[Biopython-dev] [Biopython] Fw: Developing a wrapper for EBI dbfetch

[有賀淳/Jun Aruga]

Great,
I want to comment this weekend, if it will have not been merged at that
time yet.

Jun

On Tue, Aug 15, 2017 at 5:39 PM, Peter Cock <p.j.a.cock at googlemail.com>
wrote:

> Would anyone like to comment on Francesco's pull request:
>
> https://github.com/biopython/biopython/pull/1298
>
> This is to add a wrapper for EBI's dbfetch, originally logged as:
>
> https://github.com/biopython/biopython/issues/443
>
> Thanks,
>
> Peter
>
> On Wed, Jun 21, 2017 at 12:06 PM, Peter Cock <p.j.a.cock at googlemail.com>
> wrote:
> > CC biopython-dev for the module naming in particular.
> >
> > General feedback or ideas about supporting the EBI's web-interface
> > (their REST API, similar to the NCBI's Entrez utilities, or TogoWS)
> > are welcome here or on the GitHub issue:
> >
> > https://github.com/biopython/biopython/issues/443
> >
> > Peter
> >
> > On Wed, Jun 21, 2017 at 11:25 AM, Francesco Gastaldello (Staff)
> > <f.gastaldello at dundee.ac.uk> wrote:
> >>
> >> Hi all,
> >>
> >> this mail regard the development on my behalf for the dbfetch wrapper.
> More info on the service are here: http://www.ebi.ac.uk/Tools/
> dbfetch/dbfetch
> >>
> >> There is already an issue on the Biopython GitHub (#443) were me and
> Peter Cock are discussing how to place the module when it's going to be
> ready.
> >>
> >> He mentioned the possibility to place it in Bio/EBI/__init__.py, but
> he's concened that this won't comply with PEP8 guidelines.
> >>
> >> Any thoughts about it?
> >>
> >> Regards,
> >>
> >> Francesco
> >>
> >> Dbfetch < EMBL-EBI
> >> www.ebi.ac.uk
> >> Dbfetch Help. What is dbfetch? Dbfetch is an abbreviation for "database
> fetch". Dbfetch provides an easy way to retrieve entries from various
> databases at the EMBL ...
> _______________________________________________
> Biopython-dev mailing list
> Biopython-dev at mailman.open-bio.org
> http://mailman.open-bio.org/mailman/listinfo/biopython-dev
>



-- 
Jun Aruga
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.open-bio.org/pipermail/biopython-dev/attachments/20170816/1aa3aa10/attachment.html>