[Biopython-dev] [Bug 2907] When a genomic record has been loaded using eFetch, if it is written to genbank format the header line refers to 'aa'
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Tue Aug 25 09:40:29 UTC 2009
http://bugzilla.open-bio.org/show_bug.cgi?id=2907
biopython-bugzilla at maubp.freeserve.co.uk changed:
What |Removed |Added
----------------------------------------------------------------------------
Status|NEW |RESOLVED
Resolution| |FIXED
------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk 2009-08-25 05:40 EST -------
Hi David,
I spotted this (aa/bp mix up in the LOCUS line) after the beta was out, and it
should already be fixed in Biopython 1.51 final. Please update and retest, and
if there is still a problem please reopen this bug. Thanks!
Note that unless I was going to modify the annotation (which the background use
case suggests you are), I would save the raw GenBank record from Entrez
directly to disk (since parsing it and then writing it back out with SeqIO
isn't yet perfect - e.g. the date in the LOCUS line).
Peter
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