[Bioperl-l] Parsing PSI-BLAST results with SearchIO
NickJD
nickjd at gmail.com
Wed Jan 13 08:18:12 EST 2010
I am trying to parse PSI-BLAST results using SearchIO and some very
basic code just to read the number of hits, number of hsps, etc. I
have done 10 rounds on 1 input sequence and parsed it but it seems to
treat each round as a separate result, so round/iteration is always 1
and new_hits its always the total list not the ones that are new to
that round. Does anyone have any experience of this?
Thanks,
Nick
More information about the Bioperl-l
mailing list