[Bioperl-l] BioPerl 1.6.0 alpha 3 released

[Kristine Briedis]

Hi Chris,

ActivePerl.  I'll open a bug.  Thanks!

Cheers,
Kristine


-----Original Message-----
From: Chris Fields [mailto:cjfields at illinois.edu] 
Sent: Wednesday, September 23, 2009 1:59 PM
To: Kristine Briedis
Cc: BioPerl List
Subject: Re: [Bioperl-l] BioPerl 1.6.0 alpha 3 released

Yes, that would be good.  I don't have immediate access to anything  
running WinXP/vista/7 but I can probably look into this sometime  
tomorrow or Monday.

Just to make sure, is this with ActivePerl or Strawberry Perl?

chris

On Sep 23, 2009, at 3:52 PM, Kristine Briedis wrote:

> Hi Chris,
>
> We tested BioPerl 1.6.0 alpha 3 with our set of Pipeline Pilot  
> regressions and noticed a small problem.  The fasta validation check  
> for '>' in SeqIO::fasta (line 127) throws when used with  
> Index::Fasta on Windows because the position after '>' is being  
> indexed.  It looks like you already fixed the same problem for Linux  
> (comment in line 190 of Index::Fasta).  Do you want me to put this  
> into bugzilla?  Let me know if you have any questions.  Thanks!
>
> Cheers,
> Kristine
>
>
> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- 
> bounces at lists.open-bio.org] On Behalf Of Chris Fields
> Sent: Tuesday, September 22, 2009 1:29 PM
> To: BioPerl List
> Subject: [Bioperl-l] BioPerl 1.6.0 alpha 3 released
>
> The third alpha is now out and propagating it's way around the
> intertubes:
>
> http://search.cpan.org/~cjfields/BioPerl-1.6.0_3/
>
> Pick your favorite archive here:
>
> http://bioperl.org/DIST/RC/
>
> This includes some unmerged changes from 1.6.0.  Test failures from
> the last alpha indicated these somehow were missed, so I basically ran
> a global diff against main trunk to check for missing commits (all
> located in t/ as it turned out).
>
> Also fixed is are the SeqFeature_SQLite.t failures; this is a file
> autogenerated with Build.PL tests that somehow made it's way into the
> last alpha release.  This is now properly cleaned up along with it's
> test database using './Build clean'.  BTW, very nice SQLite
> implementation; I may be using it!
>
> Please let me know if anything pops up; I'm hoping to release 1.6.1 by
> this Thursday-Friday.
>
> Enjoy!
>
> chris
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