[Bioperl-l] BioPerl 1.6.0 alpha 3 released
Chris Fields
cjfields at illinois.edu
Wed Sep 23 20:58:37 UTC 2009
Yes, that would be good. I don't have immediate access to anything
running WinXP/vista/7 but I can probably look into this sometime
tomorrow or Monday.
Just to make sure, is this with ActivePerl or Strawberry Perl?
chris
On Sep 23, 2009, at 3:52 PM, Kristine Briedis wrote:
> Hi Chris,
>
> We tested BioPerl 1.6.0 alpha 3 with our set of Pipeline Pilot
> regressions and noticed a small problem. The fasta validation check
> for '>' in SeqIO::fasta (line 127) throws when used with
> Index::Fasta on Windows because the position after '>' is being
> indexed. It looks like you already fixed the same problem for Linux
> (comment in line 190 of Index::Fasta). Do you want me to put this
> into bugzilla? Let me know if you have any questions. Thanks!
>
> Cheers,
> Kristine
>
>
> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Chris Fields
> Sent: Tuesday, September 22, 2009 1:29 PM
> To: BioPerl List
> Subject: [Bioperl-l] BioPerl 1.6.0 alpha 3 released
>
> The third alpha is now out and propagating it's way around the
> intertubes:
>
> http://search.cpan.org/~cjfields/BioPerl-1.6.0_3/
>
> Pick your favorite archive here:
>
> http://bioperl.org/DIST/RC/
>
> This includes some unmerged changes from 1.6.0. Test failures from
> the last alpha indicated these somehow were missed, so I basically ran
> a global diff against main trunk to check for missing commits (all
> located in t/ as it turned out).
>
> Also fixed is are the SeqFeature_SQLite.t failures; this is a file
> autogenerated with Build.PL tests that somehow made it's way into the
> last alpha release. This is now properly cleaned up along with it's
> test database using './Build clean'. BTW, very nice SQLite
> implementation; I may be using it!
>
> Please let me know if anything pops up; I'm hoping to release 1.6.1 by
> this Thursday-Friday.
>
> Enjoy!
>
> chris
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