[Bioperl-l] BioPerl 1.6.0 alpha 3 released

[Chris Fields]

Kristine,

I have been planning on installing a temp WinXP VM using VirtualBox,  
so this'll give me an excuse to set that up ;>

chris

On Sep 23, 2009, at 5:40 PM, Kristine Briedis wrote:

> Hi Chris,
>
> ActivePerl.  I'll open a bug.  Thanks!
>
> Cheers,
> Kristine
>
>
> -----Original Message-----
> From: Chris Fields [mailto:cjfields at illinois.edu]
> Sent: Wednesday, September 23, 2009 1:59 PM
> To: Kristine Briedis
> Cc: BioPerl List
> Subject: Re: [Bioperl-l] BioPerl 1.6.0 alpha 3 released
>
> Yes, that would be good.  I don't have immediate access to anything
> running WinXP/vista/7 but I can probably look into this sometime
> tomorrow or Monday.
>
> Just to make sure, is this with ActivePerl or Strawberry Perl?
>
> chris
>
> On Sep 23, 2009, at 3:52 PM, Kristine Briedis wrote:
>
>> Hi Chris,
>>
>> We tested BioPerl 1.6.0 alpha 3 with our set of Pipeline Pilot
>> regressions and noticed a small problem.  The fasta validation check
>> for '>' in SeqIO::fasta (line 127) throws when used with
>> Index::Fasta on Windows because the position after '>' is being
>> indexed.  It looks like you already fixed the same problem for Linux
>> (comment in line 190 of Index::Fasta).  Do you want me to put this
>> into bugzilla?  Let me know if you have any questions.  Thanks!
>>
>> Cheers,
>> Kristine
>>
>>
>> -----Original Message-----
>> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
>> bounces at lists.open-bio.org] On Behalf Of Chris Fields
>> Sent: Tuesday, September 22, 2009 1:29 PM
>> To: BioPerl List
>> Subject: [Bioperl-l] BioPerl 1.6.0 alpha 3 released
>>
>> The third alpha is now out and propagating it's way around the
>> intertubes:
>>
>> http://search.cpan.org/~cjfields/BioPerl-1.6.0_3/
>>
>> Pick your favorite archive here:
>>
>> http://bioperl.org/DIST/RC/
>>
>> This includes some unmerged changes from 1.6.0.  Test failures from
>> the last alpha indicated these somehow were missed, so I basically  
>> ran
>> a global diff against main trunk to check for missing commits (all
>> located in t/ as it turned out).
>>
>> Also fixed is are the SeqFeature_SQLite.t failures; this is a file
>> autogenerated with Build.PL tests that somehow made it's way into the
>> last alpha release.  This is now properly cleaned up along with it's
>> test database using './Build clean'.  BTW, very nice SQLite
>> implementation; I may be using it!
>>
>> Please let me know if anything pops up; I'm hoping to release 1.6.1  
>> by
>> this Thursday-Friday.
>>
>> Enjoy!
>>
>> chris
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>
>
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