[Bioperl-l] BioPerl 1.6.0 alpha 3 released

[Kristine Briedis]

Hi Chris,

We tested BioPerl 1.6.0 alpha 3 with our set of Pipeline Pilot regressions and noticed a small problem.  The fasta validation check for '>' in SeqIO::fasta (line 127) throws when used with Index::Fasta on Windows because the position after '>' is being indexed.  It looks like you already fixed the same problem for Linux (comment in line 190 of Index::Fasta).  Do you want me to put this into bugzilla?  Let me know if you have any questions.  Thanks!

Cheers,
Kristine


-----Original Message-----
From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Chris Fields
Sent: Tuesday, September 22, 2009 1:29 PM
To: BioPerl List
Subject: [Bioperl-l] BioPerl 1.6.0 alpha 3 released

The third alpha is now out and propagating it's way around the  
intertubes:

http://search.cpan.org/~cjfields/BioPerl-1.6.0_3/

Pick your favorite archive here:

http://bioperl.org/DIST/RC/

This includes some unmerged changes from 1.6.0.  Test failures from  
the last alpha indicated these somehow were missed, so I basically ran  
a global diff against main trunk to check for missing commits (all  
located in t/ as it turned out).

Also fixed is are the SeqFeature_SQLite.t failures; this is a file  
autogenerated with Build.PL tests that somehow made it's way into the  
last alpha release.  This is now properly cleaned up along with it's  
test database using './Build clean'.  BTW, very nice SQLite  
implementation; I may be using it!

Please let me know if anything pops up; I'm hoping to release 1.6.1 by  
this Thursday-Friday.

Enjoy!

chris
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