[Bioperl-l] need help urgently

[Neeti Somaiya]

Thanks for the replies.

So the get seq by accession/GI worked for me. Now can anyone tell me
the easiest way to get the GI /Accession of a gene from the gene
id/gene name?

-Neeti
Even my blood says, B positive



On Fri, Sep 4, 2009 at 2:47 PM, Neeti Somaiya<neetisomaiya at gmail.com> wrote:
> Thanks for the link.
> So I need only the following lines of code to get the sequence?
>
> use Bio::DB::GenBank;
> $db_obj = Bio::DB::GenBank->new;
> $seq_obj = $db_obj->get_Seq_by_id(2);
>
> How do I print the sequence?
> $seq_obj->seq ??
>
> -Neeti
> Even my blood says, B positive
>
>
>
> On Fri, Sep 4, 2009 at 1:31 PM, K. Shameer<shameer at ncbs.res.in> wrote:
>>
>> Retrieving a sequence from a database : BioPerl HOWTO
>> http://bit.ly/RWIot
>>
>> Trust this helps,
>> Khader Shameer
>> NCBS - TIFR
>>
>>> Hi,
>>>
>>> I have an input list of gene names (can get gene ids from a local db
>>> if required).
>>> I need to fetch sequences of these genes. Can someone please guide me
>>> as to how this can be done using perl/bioperl?
>>>
>>> Any help will be deeply appreciated.
>>>
>>> Thanks.
>>>
>>> -Neeti
>>> Even my blood says, B positive
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>
>>
>>
>>
>