[Bioperl-l] need help urgently

Neeti Somaiya neetisomaiya at gmail.com
Fri Sep 4 09:17:17 UTC 2009


Thanks for the link.
So I need only the following lines of code to get the sequence?

use Bio::DB::GenBank;
$db_obj = Bio::DB::GenBank->new;
$seq_obj = $db_obj->get_Seq_by_id(2);

How do I print the sequence?
$seq_obj->seq ??

-Neeti
Even my blood says, B positive



On Fri, Sep 4, 2009 at 1:31 PM, K. Shameer<shameer at ncbs.res.in> wrote:
>
> Retrieving a sequence from a database : BioPerl HOWTO
> http://bit.ly/RWIot
>
> Trust this helps,
> Khader Shameer
> NCBS - TIFR
>
>> Hi,
>>
>> I have an input list of gene names (can get gene ids from a local db
>> if required).
>> I need to fetch sequences of these genes. Can someone please guide me
>> as to how this can be done using perl/bioperl?
>>
>> Any help will be deeply appreciated.
>>
>> Thanks.
>>
>> -Neeti
>> Even my blood says, B positive
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>
>
>



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