[Bioperl-l] need help urgently

[Emanuele Osimo]

Try this:
http://david.abcc.ncifcrf.gov/conversion.jsp

Emanuele


On Fri, Sep 4, 2009 at 12:13, Neeti Somaiya <neetisomaiya at gmail.com> wrote:

> Thanks for the replies.
>
> So the get seq by accession/GI worked for me. Now can anyone tell me
> the easiest way to get the GI /Accession of a gene from the gene
> id/gene name?
>
> -Neeti
> Even my blood says, B positive
>
>
>
> On Fri, Sep 4, 2009 at 2:47 PM, Neeti Somaiya<neetisomaiya at gmail.com>
> wrote:
> > Thanks for the link.
> > So I need only the following lines of code to get the sequence?
> >
> > use Bio::DB::GenBank;
> > $db_obj = Bio::DB::GenBank->new;
> > $seq_obj = $db_obj->get_Seq_by_id(2);
> >
> > How do I print the sequence?
> > $seq_obj->seq ??
> >
> > -Neeti
> > Even my blood says, B positive
> >
> >
> >
> > On Fri, Sep 4, 2009 at 1:31 PM, K. Shameer<shameer at ncbs.res.in> wrote:
> >>
> >> Retrieving a sequence from a database : BioPerl HOWTO
> >> http://bit.ly/RWIot
> >>
> >> Trust this helps,
> >> Khader Shameer
> >> NCBS - TIFR
> >>
> >>> Hi,
> >>>
> >>> I have an input list of gene names (can get gene ids from a local db
> >>> if required).
> >>> I need to fetch sequences of these genes. Can someone please guide me
> >>> as to how this can be done using perl/bioperl?
> >>>
> >>> Any help will be deeply appreciated.
> >>>
> >>> Thanks.
> >>>
> >>> -Neeti
> >>> Even my blood says, B positive
> >>> _______________________________________________
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> >>> Bioperl-l at lists.open-bio.org
> >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> >>>
> >>
> >>
> >>
> >
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