[Bioperl-l] Parsing needle/water output

[Scott Markel]

Shalabh,

Have you looked at Bio::AlignIO::emboss?

Scott

Scott Markel, Ph.D.
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> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of shalabh sharma
> Sent: Thursday, 14 May 2009 12:54 PM
> To: bioperl-l
> Subject: [Bioperl-l] Parsing needle/water output
> 
> Hi All,
>          Is there any parser/module available to parse needle/water output
> report (from emboss) to get the start and end position of alignment.
> 
> Thanks
> Shalabh
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