[Bioperl-l] Parsing needle/water output

[Jason Stajich]

Bio::AlignIO::emboss does parse or you can request it in msf format  
and parse with Bio::AlignIO::msf

-jason
On May 14, 2009, at 12:53 PM, shalabh sharma wrote:

> Hi All,
>         Is there any parser/module available to parse needle/water  
> output
> report (from emboss) to get the start and end position of alignment.
>
> Thanks
> Shalabh
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Jason Stajich
jason at bioperl.org