[Bioperl-l] reading and writing tree

[Mark A. Jensen]

Sure, you can do :

my $output = new Bio::TreeIO(-fh => \*STDOUT, -format => "newick");

On wiki, have a look at 

http://www.bioperl.org/wiki/HOWTO:Trees#Reading_and_Writing_Trees

cheers, 
Mark


----- Original Message ----- 
From: "Peter Menzel" <pmenzel at googlemail.com>
To: "Mark A. Jensen" <maj at fortinbras.us>
Sent: Monday, March 30, 2009 12:36 PM
Subject: Re: [Bioperl-l] reading and writing tree


> On Mon, Mar 30, 2009 at 6:16 PM, Mark A. Jensen <maj at fortinbras.us> wrote:
>> my $output = new Bio::TreeIO(-file => ">${filename}.new", -format =>
>> "newick");
>>
>> (just like writing to files using open() )
> 
> awesome, this works fine. Should be added to the wiki.. Is there a way
> to write to STDOUT also?
> 
> best, Peter
> 
>