[Bioperl-l] use CLUSTALW on Windows?
Jason Stajich
jason at bioperl.org
Thu Apr 30 17:31:19 UTC 2009
the bioperl-run module of Bio::Tools::Run::Alignment::Clustalw or
MUSCLE ones don't work then? They do the cmdline work for you.
On Apr 30, 2009, at 9:52 AM, Jon Flowers wrote:
>
> Hi,
>
> There is no means to do this in bioperl, but it is simple to make a
> system
> call and execute an MSA program such as MUSCLE to align fasta-
> formatted
> sequences using something like...
>
> qx(muscle -in $infilename -out $outfilename)
>
> Jonathan
>
>
> laxmanb wrote:
>>
>> I need to create a multiple sequence alignment of some sequences
>> using
>> CLUSTALW or any other Multiple sequence alignment program. However,
>> I've
>> learnt that this functionality used to be UNIX/Linux only. However,
>> the
>> documentation is also very old, so I'd like to know if any CLUSTAL/
>> any
>> other MSA programs can be run using BioPerl on Windows.
>>
>> Thank you for your time :)
>>
>
> --
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> Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
>
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Jason Stajich
jason at bioperl.org
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