[Bioperl-l] Bio::Annotations::Collection confusion
Kevin Brown
Kevin.M.Brown at asu.edu
Thu Apr 30 19:27:15 UTC 2009
So, I'm parsing Genbank sequences to pull out the various exons. I found
the way to get the NCBI Exon number from each feature, but am confused
about one of the methods. When I do annotation->as_text I'm expecting to
get back 1 from the feature, but instead get back Value: 1 ??!? Why is
the value from the NCBI file getting that text tagged onto it?
http://www.ncbi.nlm.nih.gov/nuccore/73622129
exon 1..774
/gene="BOLA2"
/gene_synonym="BOLA2A; My016"
/inference="alignment:Splign"
/number=1
print ($f->annotation->get_Annotations('number'))[0]->as_text;
Value: 1
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