[Bioperl-l] use CLUSTALW on Windows?
Chris Fields
cjfields at illinois.edu
Thu Apr 30 17:04:46 UTC 2009
I don't recall this being a UNIX-only issue, though admittedly it's
been years since I've tried running the bioperl-run modules on WinXP.
I do recall getting BLAST, EMBOSS and others to work though; I don't
see why ClustalW would be much different.
Have you actually tested this out and found a problem? Have you tried
cygwin?
chris
On Apr 30, 2009, at 11:52 AM, Jon Flowers wrote:
>
> Hi,
>
> There is no means to do this in bioperl, but it is simple to make a
> system
> call and execute an MSA program such as MUSCLE to align fasta-
> formatted
> sequences using something like...
>
> qx(muscle -in $infilename -out $outfilename)
>
> Jonathan
>
>
> laxmanb wrote:
>>
>> I need to create a multiple sequence alignment of some sequences
>> using
>> CLUSTALW or any other Multiple sequence alignment program. However,
>> I've
>> learnt that this functionality used to be UNIX/Linux only. However,
>> the
>> documentation is also very old, so I'd like to know if any CLUSTAL/
>> any
>> other MSA programs can be run using BioPerl on Windows.
>>
>> Thank you for your time :)
>>
>
> --
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> Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
>
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