[Bioperl-l] use CLUSTALW on Windows?

[Jon Flowers]

Hi,

There is no means to do this in bioperl, but it is simple to make a system
call and execute an MSA program such as MUSCLE to align fasta-formatted
sequences using something like...

qx(muscle -in $infilename -out $outfilename)  

Jonathan


laxmanb wrote:
> 
> I need to create a multiple sequence alignment of some sequences using
> CLUSTALW or any other Multiple sequence alignment program. However, I've
> learnt that this functionality used to be UNIX/Linux only. However, the
> documentation is also very old, so I'd like to know if any CLUSTAL/ any
> other MSA programs can be run using BioPerl on Windows.
> 
> Thank you for your time :)
> 

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