[Biojava-dev] biojava3 sequence tools

[Mark Schreiber]

I think SeqIOTools had a method for this, possible also available in
RichSequence.IOTools.

As Richard says, not guaranteed to work in all cases.




On Wed, Aug 11, 2010 at 12:05 PM, Richard Holland <holland at eaglegenomics.com
> wrote:

> You mean an auto-detector that takes a String input, guesses based on
> content what it is, and returns a Sequence object of the appropriate type,
> being Protein or DNA etc.? Not that I know of. A bit hard too - if all the
> letters in the String are a valid subset from two or more alphabets (e.g.
> ATCG are all in the Protein alphabet as well as being DNA), how do we know
> which one it is?
>
> On 11 Aug 2010, at 03:24, Andreas Prlic wrote:
>
> > Hi,
> >
> > just wondering if we have already a class that can accept any protein
> > or DNA sequence as input and can return a Sequence object of the
> > correct type ?
> >
> > Andreas
> > _______________________________________________
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>
> --
> Richard Holland, BSc MBCS
> Operations and Delivery Director, Eagle Genomics Ltd
> T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
> http://www.eaglegenomics.com/
>
>
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