[Biojava-dev] biojava3 sequence tools

[Richard Holland]

You mean an auto-detector that takes a String input, guesses based on content what it is, and returns a Sequence object of the appropriate type, being Protein or DNA etc.? Not that I know of. A bit hard too - if all the letters in the String are a valid subset from two or more alphabets (e.g. ATCG are all in the Protein alphabet as well as being DNA), how do we know which one it is?

On 11 Aug 2010, at 03:24, Andreas Prlic wrote:

> Hi,
> 
> just wondering if we have already a class that can accept any protein
> or DNA sequence as input and can return a Sequence object of the
> correct type ?
> 
> Andreas
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--
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
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