[Biojava-dev] Biojava - svn migration

Mark Schreiber markjschreiber at gmail.com
Sat Dec 29 03:04:22 UTC 2007


I'll try this out when I get back from a camping trip on the 6th.
It's hard to get good connectivity on the beach : )

- Mark

On Dec 29, 2007 2:00 AM, Jason Stajich <jason at bioperl.org> wrote:
> I believe over http when the SVN repository is rsynced to code.open-
> bio.org
>
> Chris D - can you weigh in?
>
> -jason
>
> On Dec 28, 2007, at 2:33 AM, Andreas Prlic wrote:
>
> > Hi Mark,
> >
> > In the meantime I moved the repository root location to
> > /home/svn-repositories/biojava
> >
> > which gives this new checkout line for the main trunk:
> >
> > svn co svn+ssh://dev.open-bio.org/home/svn-repositories/biojava/
> > biojava-live/trunk ./biojava-live
> >
> > I have to enter my password multiple times but besides this, it
> > works fine.
> >
> > * Can somebody working on windows  test if checking out and
> > compiling biojava works ok?
> > (to test the EOL issues, see http://biojava.org/wiki/
> > CVS_to_SVN_Migration )
> >
> > * the next question is still open: How will we provide the
> > anonymous checkouts?
> >
> > Andreas
> >
> >
> >
> > On 28 Dec 2007, at 01:48, Mark Schreiber wrote:
> >
> >> Hi all -
> >>
> >> I am trying to do a SVN check out with Netbeans but the connection
> >> just seems to hang without doing anything (same happens with command
> >> line?). I am using the path specified in the biojava wiki but the
> >> conversation below suggests that the actual path may be different.
> >> What then is the 'home' path?
> >>
> >> Also, does the SSH+SVN command need to be prepended by an SSH command
> >> (or plink -ssh on windows)?
> >>
> >> - Mark
> >>
> >> On Dec 28, 2007 5:37 AM, Hilmar Lapp <hlapp at duke.edu> wrote:
> >>> I see. Makes sense. -hilmar
> >>>
> >>>
> >>> On Dec 27, 2007, at 4:30 PM, Jason Stajich wrote:
> >>>
> >>>> My  idea was that just like
> >>>> /home/reposiitory/biojava
> >>>>   we'd put the SVN in
> >>>> /home/svn-repository/biojava
> >>>>
> >>>> So each of the biojava SVN sub-projects ought would be
> >>>>  /home/svn-repository/biojava/biojava-live
> >>>>  /home/svn-repository/biojava/biojava-ensj
> >>>>
> >>>> /home/svn is really the homedir for the svn user and som utility
> >>>> stuff like the svn login passwords so I think it is better not to
> >>>> put the repos in there.
> >>>>
> >>>> -jason
> >>>> On Dec 27, 2007, at 1:31 PM, Hilmar Lapp wrote:
> >>>>
> >>>>>
> >>>>> On Dec 27, 2007, at 12:32 PM, Chris Fields wrote:
> >>>>>
> >>>>>>
> >>>>>> I agree, but there is already a /home/svn directory which appears
> >>>>>> related to blipkit.  We would need to move the blipkit stuff into
> >>>>>> it's own subdir and go from there.
> >>>>>>
> >>>>>
> >>>>>
> >>>>> I.e., it was set up such that blipkit would be the only project
> >>>>> with in it? I'd assume that was by mistake. Also, the last update
> >>>>> that I have is that blipkit hasn't been active for a while, though
> >>>>> I'm not sure.
> >>>>>
> >>>>> ChrisM - do you recall the decisions leading to the blipkit svn
> >>>>> setup? Could it be moved to a subdirectory as ChrisF suggests?
> >>>>>
> >>>>>      -hilmar
> >>>>> --
> >>>>> ===========================================================
> >>>>> : Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
> >>>>> ===========================================================
> >>>>>
> >>>>>
> >>>>>
> >>>>
> >>>
> >>> --
> >>> ===========================================================
> >>> : Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
> >>> ===========================================================
> >>>
> >>>
> >>>
> >>>
> >
> > ----------------------------------------------------------------------
> > -
> >
> > Andreas Prlic      Wellcome Trust Sanger Institute
> >                               Hinxton, Cambridge CB10 1SA, UK
> >                               +44 (0) 1223 49 6891
> >
> > ----------------------------------------------------------------------
> > -
> >
> >
> >
> >
> > --
> > The Wellcome Trust Sanger Institute is operated by Genome
> > ResearchLimited, a charity registered in England with number
> > 1021457 and acompany registered in England with number 2742969,
> > whose registeredoffice is 215 Euston Road, London, NW1 2BE.
>
>



More information about the biojava-dev mailing list