[Biojava-dev] Biojava - svn migration

Jason Stajich jason at bioperl.org
Fri Dec 28 18:00:43 UTC 2007


I believe over http when the SVN repository is rsynced to code.open- 
bio.org

Chris D - can you weigh in?

-jason
On Dec 28, 2007, at 2:33 AM, Andreas Prlic wrote:

> Hi Mark,
>
> In the meantime I moved the repository root location to
> /home/svn-repositories/biojava
>
> which gives this new checkout line for the main trunk:
>
> svn co svn+ssh://dev.open-bio.org/home/svn-repositories/biojava/ 
> biojava-live/trunk ./biojava-live
>
> I have to enter my password multiple times but besides this, it  
> works fine.
>
> * Can somebody working on windows  test if checking out and  
> compiling biojava works ok?
> (to test the EOL issues, see http://biojava.org/wiki/ 
> CVS_to_SVN_Migration )
>
> * the next question is still open: How will we provide the  
> anonymous checkouts?
>
> Andreas
>
>
>
> On 28 Dec 2007, at 01:48, Mark Schreiber wrote:
>
>> Hi all -
>>
>> I am trying to do a SVN check out with Netbeans but the connection
>> just seems to hang without doing anything (same happens with command
>> line?). I am using the path specified in the biojava wiki but the
>> conversation below suggests that the actual path may be different.
>> What then is the 'home' path?
>>
>> Also, does the SSH+SVN command need to be prepended by an SSH command
>> (or plink -ssh on windows)?
>>
>> - Mark
>>
>> On Dec 28, 2007 5:37 AM, Hilmar Lapp <hlapp at duke.edu> wrote:
>>> I see. Makes sense. -hilmar
>>>
>>>
>>> On Dec 27, 2007, at 4:30 PM, Jason Stajich wrote:
>>>
>>>> My  idea was that just like
>>>> /home/reposiitory/biojava
>>>>   we'd put the SVN in
>>>> /home/svn-repository/biojava
>>>>
>>>> So each of the biojava SVN sub-projects ought would be
>>>>  /home/svn-repository/biojava/biojava-live
>>>>  /home/svn-repository/biojava/biojava-ensj
>>>>
>>>> /home/svn is really the homedir for the svn user and som utility
>>>> stuff like the svn login passwords so I think it is better not to
>>>> put the repos in there.
>>>>
>>>> -jason
>>>> On Dec 27, 2007, at 1:31 PM, Hilmar Lapp wrote:
>>>>
>>>>>
>>>>> On Dec 27, 2007, at 12:32 PM, Chris Fields wrote:
>>>>>
>>>>>>
>>>>>> I agree, but there is already a /home/svn directory which appears
>>>>>> related to blipkit.  We would need to move the blipkit stuff into
>>>>>> it's own subdir and go from there.
>>>>>>
>>>>>
>>>>>
>>>>> I.e., it was set up such that blipkit would be the only project
>>>>> with in it? I'd assume that was by mistake. Also, the last update
>>>>> that I have is that blipkit hasn't been active for a while, though
>>>>> I'm not sure.
>>>>>
>>>>> ChrisM - do you recall the decisions leading to the blipkit svn
>>>>> setup? Could it be moved to a subdirectory as ChrisF suggests?
>>>>>
>>>>>      -hilmar
>>>>> --
>>>>> ===========================================================
>>>>> : Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
>>>>> ===========================================================
>>>>>
>>>>>
>>>>>
>>>>
>>>
>>> --
>>> ===========================================================
>>> : Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
>>> ===========================================================
>>>
>>>
>>>
>>>
>
> ---------------------------------------------------------------------- 
> -
>
> Andreas Prlic      Wellcome Trust Sanger Institute
>                               Hinxton, Cambridge CB10 1SA, UK
>                               +44 (0) 1223 49 6891
>
> ---------------------------------------------------------------------- 
> -
>
>
>
>
> -- 
> The Wellcome Trust Sanger Institute is operated by Genome  
> ResearchLimited, a charity registered in England with number  
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